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iGraphMatch is an R package for finding corresponding vertices between two graphs, also known as graph matching. The package implements three categories of prevalent graph matching algorithms including relaxation-based, percolation-based,…
A graphical model is a multivariate (potentially very high dimensional) probabilistic model, which is formed by combining lower dimensional components. Inference (computation of conditional probabilities) is based on message passing…
I introduce Forecastable Component Analysis (ForeCA), a novel dimension reduction technique for temporally dependent signals. Based on a new forecastability measure, ForeCA finds an optimal transformation to separate a multivariate time…
This paper presents an R package to handle and represent measurements with errors in a very simple way. We briefly introduce the main concepts of metrology and propagation of uncertainty, and discuss related R packages. Building upon this,…
The central notion of this work is that of a functor between categories of finitely presented modules over so-called computable rings, i.e. rings R where one can algorithmically solve inhomogeneous linear equations with coefficients in R.…
A tutorial introduction to projective geometric algebra (PGA), a modern, coordinate-free framework for doing euclidean geometry. PGA features: uniform representation of points, lines, and planes; robust, parallel-safe join and meet…
We introduce the MathGR package, written in Mathematica. The package can manipulate tensor and GR calculations with either abstract or explicit indices, simplify tensors with permutational symmetries, decompose tensors from abstract indices…
When performing an aggregate data meta-analysis of a continuous outcome, researchers often come across primary studies that report the sample median of the outcome. However, standard meta-analytic methods typically cannot be directly…
When probability predictions are too cautious for decision making, boldness-recalibration enables responsible emboldening while maintaining the probability of calibration required by the user. We formulate boldness-recalibration as a…
We survey some general-purpose symbolic software packages that implement algorithms from enumerative and analytic combinatorics. Software for the following areas is covered: basic combinatorial objects, symbolic combinatorics, P\'olya…
Designing software systems for Geometric Computing applications can be a challenging task. Software engineers typically use software abstractions to hide and manage the high complexity of such systems. Without the presence of a unifying…
This review presents how R, the popular statistical environment and programming language, can be used in the frame of proteomics data analysis. A short introduction to R is given, with special emphasis on some of the features that make R…
This paper complements "Writing R Extensions," the official guide for writing R extensions, for those interested in developing R packages using Rust. It highlights idiosyncrasies of R and Rust that must be addressed by any integration and…
This article introduces the R package csranks for estimation and inference involving ranks. First, we review methods for the construction of confidence sets for ranks, namely marginal and simultaneous confidence sets as well as confidence…
The INLA package provides a tool for computationally efficient Bayesian modeling and inference for various widely used models, more formally the class of latent Gaussian models. It is a non-sampling based framework which provides…
We present a short tutorial on to the use of the R gasper package. Gasper is a package dedicated to signal processing on graphs. It also provides an interface to the SuiteSparse Matrix Collection.
Abstraction is key to human and artificial intelligence as it allows one to see common structure in otherwise distinct objects or situations and as such it is a key element for generality in AI. Anti-unification (or generalization) is…
CensSpatial is an R package for analyzing spatial censored data through linear models. It offers a set of tools for simulating, estimating, making predictions, and performing local influence diagnostics for outlier detection. The package…
The article presents some aspects on the use of computer in teaching general relativity for undergraduate students with some experience in computer manipulation. The article presents some simple algebraic programming (in REDUCE+EXCALC…
Nowadays, the analysis of dynamics in networks represents a great deal in the Social Network Analysis research area. To support students, teachers, developers, and researchers in this work we introduce a novel R package, namely DynComm. It…