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Statistical models serve as the cornerstone for hypothesis testing in empirical studies. This paper introduces a new cross-platform Python-based package designed to utilise different likelihood prescriptions via a flexible plug-in system.…

High Energy Physics - Phenomenology · Physics 2024-01-29 Jack Y. Araz

The capabilities of the most recent language models have increased the interest in integrating them into real-world applications. However, the fact that these models generate plausible, yet incorrect text poses a constraint when considering…

Computation and Language · Computer Science 2024-05-02 Rúben Almeida , Hugo Sousa , Luís F. Cunha , Nuno Guimarães , Ricardo Campos , Alípio Jorge

We present BackboneLearn: an open-source software package and framework for scaling mixed-integer optimization (MIO) problems with indicator variables to high-dimensional problems. This optimization paradigm can naturally be used to…

Machine Learning · Computer Science 2023-11-27 Vassilis Digalakis , Christos Ziakas

This paper presents a lightweight, open-source and high-performance python package for solving peridynamics problems in solid mechanics. The development of this solver is motivated by the need for fast analysis tools to achieve the large…

Software Engineering · Computer Science 2021-09-15 B. Boys , T. J. Dodwell , M. Hobbs , M. Girolami

Since Lorenz's seminal work on a simplified weather model, the numerical analysis of nonlinear dynamical systems has become one of the main subjects of research in physics. Despite of that, there remains a need for accessible, efficient,…

In the rapidly evolving field of bioimaging, the integration and orchestration of Findable, Accessible, Interoperable, and Reusable (FAIR) image analysis workflows remains a challenge. We introduce BIOMERO, a bridge connecting OMERO, a…

Software Engineering · Computer Science 2024-07-26 Torec T. Luik , Rodrigo Rosas-Bertolini , Eric A. J. Reits , Ron A. Hoebe , Przemek M. Krawczyk

We introduce PyPulse, a Python package for imputation of biosignals in both clinical and wearable sensor settings. Missingness is commonplace in these settings and can arise from multiple causes, such as insecure sensor attachment or data…

Machine Learning · Computer Science 2024-12-10 Kevin Gao , Maxwell A. Xu , James M. Rehg , Alexander Moreno

The principles of automation and innovation serve as foundational elements for advancement in contemporary science and technology. Here, we introduce Pygen, an automation platform designed to empower researchers, technologists, and…

Software Engineering · Computer Science 2025-06-13 Saikat Barua , Mostafizur Rahman , Md Jafor Sadek , Rafiul Islam , Shehenaz Khaled , Md. Shohrab Hossain

Laboratory tests play a major role in clinical decision making because they are essential for the confirmation of diagnostics suspicions and influence medical decisions. The number of different laboratory tests available to physicians in…

Machine Learning · Computer Science 2021-05-05 Fabián Villena

Survival analysis, a foundational tool for modeling time-to-event data, has seen growing integration with machine learning (ML) approaches to handle the complexities of censored data and time-varying risks. Despite these advances,…

Quantitative Methods · Quantitative Biology 2025-02-05 Giovanni Birolo , Ivan Rossi , Flavio Sartori , Cesare Rollo , Tiziana Sanavia , Piero Fariselli

Shape-constrained nonparametric regression is a growing area in econometrics, statistics, operations research, machine learning and related fields. In the field of productivity and efficiency analysis, recent developments in the…

Computation · Statistics 2021-09-28 Sheng Dai , Yu-Hsueh Fang , Chia-Yen Lee , Timo Kuosmanen

Physical reasoning requires forward prediction: the ability to forecast what will happen next given some initial world state. We study the performance of state-of-the-art forward-prediction models in the complex physical-reasoning tasks of…

Machine Learning · Computer Science 2021-03-31 Rohit Girdhar , Laura Gustafson , Aaron Adcock , Laurens van der Maaten

Twistronics is an emerging and captivating field in condensed matter physics and material science. However, accurately and efficiently calculating the electronic structures of twisted systems remains a significant challenge. To address…

Materials Science · Physics 2026-05-27 Junxi Yu , Yichen Liu , Cheng-Cheng Liu

Inferring viscoelasticity parameters is a key challenge that often leads to non-unique solutions when fitting rheological data. In this context, we propose a machine learning approach that utilizes Bayesian optimization for parameter…

Soft Condensed Matter · Physics 2025-02-27 Isaac Y. Miranda-Valdez , Tero Mäkinen , Juha Koivisto , Mikko J. Alava

Radiomics enables the extraction of quantitative biomarkers from medical images for precision modeling, but reproducibility and scalability remain limited due to heterogeneous software implementations and incomplete adherence to standards.…

Surveys are an important research tool, providing unique measurements on subjective experiences such as sentiment and opinions that cannot be measured by other means. However, because survey data is collected from a self-selected group of…

Computation · Statistics 2023-07-14 Tal Sarig , Tal Galili , Roee Eilat

Recent advances in Machine Learning (ML) have produced models that extract structured information from complex data. However, a significant challenge lies in translating these perceptual or extractive outputs into actionable and explainable…

Machine Learning · Computer Science 2026-01-08 Dyuman Aditya , Colton Payne , Mario Leiva , Paulo Shakarian

We present ShearView, a compact, cost-effective, and open-source rheometer that enables both strain- and stress-controlled oscillatory shear experiments, while being fully compatible with high-resolution optical microscopy. Designed for…

Soft Condensed Matter · Physics 2026-01-21 Nikolaos Kalafatakis , Roberto Cerbino

We introduce hyppo, a unified library for performing multivariate hypothesis testing, including independence, two-sample, and k-sample testing. While many multivariate independence tests have R packages available, the interfaces are…

Generative language models are increasingly being subjected to psychometric questionnaires intended for human testing, in efforts to establish their traits, as benchmarks for alignment, or to simulate participants in social science…

Computation and Language · Computer Science 2025-03-14 Julian Schelb , Orr Borin , David Garcia , Andreas Spitz
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