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Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

Graph mining analyzes real-world graphs to find core substructures (connected subgraphs) in applications modeled as graphs. Substructure discovery is a process that involves identifying meaningful patterns, structures, or components within…

Social and Information Networks · Computer Science 2025-04-29 Arshdeep Singh , Abhishek Santra , Sharma Chakravarthy

We develop a new sampling method to estimate eigenvector centrality on incomplete networks. Our goal is to estimate this global centrality measure having at disposal a limited amount of data. This is the case in many real-world scenarios…

Social and Information Networks · Computer Science 2020-10-29 Nicolò Ruggeri , Caterina De Bacco

We consider the problem of embedding the nodes of a hypergraph into Euclidean space under the assumption that the interactions arose through closeness to unknown hyperedge centres. In this way, we tackle the inverse problem associated with…

Social and Information Networks · Computer Science 2025-09-11 Francesco Zigliotto , Desmond J. Higham

The paper presents a topology optimization approach that designs an optimal structure, called a self-supporting structure, which is ready to be fabricated via additive manufacturing without the usage of additional support structures. Such…

Computational Engineering, Finance, and Science · Computer Science 2017-08-25 Dengyang Zhao , Ming Li , Yusheng Liu

Graph neural networks (GNNs) with missing node features have recently received increasing interest. Such missing node features seriously hurt the performance of the existing GNNs. Some recent methods have been proposed to reconstruct the…

Machine Learning · Computer Science 2023-02-17 Chengxiang Lei , Sichao Fu , Yuetian Wang , Wenhao Qiu , Yachen Hu , Qinmu Peng , Xinge You

A paradigm that was successfully applied in the study of both pure and algorithmic problems in graph theory can be colloquially summarized as stating that "any graph is close to being the disjoint union of expanders". Our goal in this paper…

Combinatorics · Mathematics 2015-02-03 Guy Moshkovitz , Asaf Shapira

The Densest Subgraph Problem (DSP) is widely used to identify community structures and patterns in networks such as bioinformatics and social networks. While solvable in polynomial time, traditional exact algorithms face computational and…

Data Structures and Algorithms · Computer Science 2025-09-19 Dorit S. Hochbaum , Ayleen Irribarra-Cortés , Olivier Goldschmidt , Roberto Asín-Achá

Percolation theory investigates systems of interconnected units, their resilience to damage and their propensity to propagation. For random networks we can solve the percolation problems analytically using the generating function formalism.…

Disordered Systems and Neural Networks · Physics 2023-11-08 Alexei Vazquez

Joint network topology inference represents a canonical problem of jointly learning multiple graph Laplacian matrices from heterogeneous graph signals. In such a problem, a widely employed assumption is that of a simple common component…

Statistics Theory · Mathematics 2021-07-09 Yanli Yuan , De Wen Soh , Xiao Yang , Kun Guo , Tony Q. S. Quek

A new heuristic based on vertex invariants is developed to rapidly distinguish non-isomorphic graphs to a desired level of accuracy. The method is applied to sample subgraphs from an E.coli protein interaction network, and as a probe for…

Quantitative Methods · Quantitative Biology 2009-11-13 Kim Baskerville , Maya Paczuski

The problem of computing all maximal induced subgraphs of a graph G that have a graph property P, also called the maximal P-subgraphs problem, is considered. This problem is studied for hereditary, connected-hereditary and rooted-hereditary…

Data Structures and Algorithms · Computer Science 2007-05-23 Sara Cohen , Yehoshua Sagiv

An assumption that researchers have often used to model interference in a wireless network is the unit disk graph model. While many theoretical results and performance guarantees have been obtained under this model, an open research…

Networking and Internet Architecture · Computer Science 2024-09-12 Ashwin Ganesan

In deep neural networks, better results can often be obtained by increasing the complexity of previously developed basic models. However, it is unclear whether there is a way to boost performance by decreasing the complexity of such models.…

Machine Learning · Computer Science 2021-09-07 Junran Wu , Jianhao Li , Yicheng Pan , Ke Xu

A left-corner parsing algorithm with top-down filtering has been reported to show very efficient performance for unification-based systems. However, due to the nontermination of parsing with left-recursive grammars, top-down constraints…

cmp-lg · Computer Science 2008-02-03 Noriko Tomuro

Multilayer networks are a powerful paradigm to model complex systems, where multiple relations occur between the same entities. Despite the keen interest in a variety of tasks, algorithms, and analyses in this type of network, the problem…

Data Structures and Algorithms · Computer Science 2019-11-18 Edoardo Galimberti , Francesco Bonchi , Francesco Gullo , Tommaso Lanciano

In this paper we deal with a network of agents seeking to solve in a distributed way Mixed-Integer Linear Programs (MILPs) with a coupling constraint (modeling a limited shared resource) and local constraints. MILPs are NP-hard problems and…

Systems and Control · Computer Science 2020-10-28 Andrea Camisa , Ivano Notarnicola , Giuseppe Notarstefano

Hypergraphs, encoding structured interactions among any number of system units, have recently proven a successful tool to describe many real-world biological and social networks. Here we propose a framework based on statistical inference to…

Social and Information Networks · Computer Science 2022-12-01 Martina Contisciani , Federico Battiston , Caterina De Bacco

We present an approach to make molecular optimization more efficient. We infer a hypergraph replacement grammar from the ChEMBL database, count the frequencies of particular rules being used to expand particular nonterminals in other rules,…

Machine Learning · Statistics 2019-06-06 Egor Kraev , Mark Harley