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This paper proposes an optimization-based framework for the analysis of multiperiod directed multihypergraphs aimed at identifying self-amplifying structures that sustain endogenous growth in complex systems. The approach captures the…

Optimization and Control · Mathematics 2026-04-15 Víctor Blanco , Ricardo Gázquez , Juan Francisco Ocaña-Rivas

The problem of accelerating drug discovery relies heavily on automatic tools to optimize precursor molecules to afford them with better biochemical properties. Our work in this paper substantially extends prior state-of-the-art on…

Chemical Physics · Physics 2019-10-22 Wengong Jin , Regina Barzilay , Tommi Jaakkola

We propose a novel method to optimize the structure of factor graphs for graph-based inference. As an example inference task, we consider symbol detection on linear inter-symbol interference channels. The factor graph framework has the…

Information Theory · Computer Science 2023-06-02 Lukas Rapp , Luca Schmid , Andrej Rode , Laurent Schmalen

Identifying super-spreaders can be framed as a subtask of the influence maximisation problem. It seeks to pinpoint agents within a network that, if selected as single diffusion seeds, disseminate information most effectively. Multilayer…

Social and Information Networks · Computer Science 2025-10-27 Michał Czuba , Mateusz Stolarski , Adam Piróg , Piotr Bielak , Piotr Bródka

This paper studies learning the representations of whole graphs in both unsupervised and semi-supervised scenarios. Graph-level representations are critical in a variety of real-world applications such as predicting the properties of…

Machine Learning · Computer Science 2020-01-20 Fan-Yun Sun , Jordan Hoffmann , Vikas Verma , Jian Tang

The limits of molecular dynamics (MD) simulations of macromolecules are steadily pushed forward by the relentless developments of computer architectures and algorithms. This explosion in the number and extent (in size and time) of MD…

No community detection algorithm can be optimal for all possible networks, thus it is important to identify whether the algorithm is suitable for a given network. We propose a multi-step algorithmic solution scheme for overlapping community…

Social and Information Networks · Computer Science 2020-06-24 Tianyi Li , Pan Zhang

We interpret the subgraph centrality as the partition function of a network. The entropy, the internal energy and the Helmholtz free energy are defined for networks and molecular graphs on the basis of graph spectral theory. Various…

Physics and Society · Physics 2009-05-27 Ernesto Estrada , Naomichi Hatano

In this paper, we propose a graph classification approach for automatically determining whether to use a monolithic or a decomposition-based solution method. In this approach, an optimization problem is represented as a graph that captures…

Optimization and Control · Mathematics 2023-10-12 Ilias Mitrai , Prodromos Daoutidis

In this paper, we introduce a self-supervised learning method to enhance the graph-level representations with the help of a set of subgraphs. For this purpose, we propose a universal framework to generate subgraphs in an auto-regressive way…

Machine Learning · Computer Science 2021-05-10 Chenguang Wang , Ziwen Liu

In our paper, we consider the following general problems: check feasibility, count the number of feasible solutions, find an optimal solution, and count the number of optimal solutions in $P \cap Z^n$, assuming that $P$ is a polyhedron,…

Computational Complexity · Computer Science 2024-01-23 Dmitry Gribanov , Dmitry Malyshev , Nikolai Zolotykh

Hypergraphs, increasingly utilised to model complex and diverse relationships in modern networks, have gained significant attention for representing intricate higher-order interactions. Among various challenges, cohesive subgraph discovery…

Social and Information Networks · Computer Science 2025-07-14 Dahee Kim , Hyewon Kim , Song Kim , Minseok Kim , Junghoon Kim , Yeon-Chang Lee , Sungsu Lim

A serious challenge when finding influential actors in real-world social networks is the lack of knowledge about the structure of the underlying network. Current state-of-the-art methods rely on hand-crafted sampling algorithms; these…

Social and Information Networks · Computer Science 2020-02-21 Harshavardhan Kamarthi , Priyesh Vijayan , Bryan Wilder , Balaraman Ravindran , Milind Tambe

(Hyper)Graph decomposition is a family of problems that aim to break down large (hyper)graphs into smaller sub(hyper)graphs for easier analysis. The importance of this lies in its ability to enable efficient computation on large and complex…

Data Structures and Algorithms · Computer Science 2023-08-31 Marcelo Fonseca Faraj

We present a new algorithmic paradigm for the decentralized solution of graph-structured optimization problems that arise in the estimation and control of network systems. A key and novel design concept of the proposed approach is that it…

Optimization and Control · Mathematics 2020-04-01 Sungho Shin , Victor M. Zavala , Mihai Anitescu

Tensor decomposition is an effective tool for learning multi-way structures and heterogeneous features from high-dimensional data, such as the multi-view images and multichannel electroencephalography (EEG) signals, are often represented by…

Machine Learning · Computer Science 2022-06-29 Wanguang Yin , Youzhi Qu , Zhengming Ma , Quanying Liu

Molecule generation is central to a variety of applications. Current attention has been paid to approaching the generation task as subgraph prediction and assembling. Nevertheless, these methods usually rely on hand-crafted or external…

Machine Learning · Computer Science 2022-12-20 Xiangzhe Kong , Wenbing Huang , Zhixing Tan , Yang Liu

Mechanistic network models specify the mechanisms by which networks grow and change, allowing researchers to investigate complex systems using both simulation and analytical techniques. Unfortunately, it is difficult to write likelihoods…

Methodology · Statistics 2023-07-19 Jonathan Larson , Jukka-Pekka Onnela

Hypergraphs, increasingly utilised for modelling complex and diverse relationships in modern networks, gain much attention representing intricate higher-order interactions. Among various challenges, cohesive subgraph discovery is one of the…

Social and Information Networks · Computer Science 2025-12-30 Song Kim , Dahee Kim , Taejoon Han , Junghoon Kim , Hyun Ji Jeong , Jungeun Kim

Hypergraphs are structures that can be decomposed or described; in other words they are recursively countable. Here, we get exact and asymptotic enumeration results on hypergraphs by means of exponential generating functions. The number of…

Discrete Mathematics · Computer Science 2008-06-20 Tsiriniaina Andriamampianina
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