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The biological membrane, which compartmentalizes the cell and its organelles, exhibit wide variety of macroscopic shapes of varying morphology and topology. A systematic understanding of the relation of membrane shapes to composition,…

Biological Physics · Physics 2011-09-23 N. Ramakrishnan , P. B. Sunil Kumar , John H. Ipsen

Accurate representation of interfaces and flux exchange is vital for coupled multiphysics simulations across a broad range of applications. Currently, coupling approaches are limited by the underlying discretization or to specific physical…

Fluid Dynamics · Physics 2026-03-10 Ethan Huff , Savio J. Poovathingal

Biomembranes play a central role in various phenomena like locomotion of cells, cell-cell interactions, packaging of nutrients, and in maintaining organelle morphology and functionality. During these processes, the membranes undergo…

Quantitative Methods · Quantitative Biology 2021-12-01 Debabrata Auddya , Xiaoxuan Zhang , Rahul Gulati , Ritvik Vasan , Krishna Garikipati , Padmini Rangamani , Shiva Rudraraju

Efficient representation of articulated objects such as human bodies is an important problem in computer vision and graphics. To efficiently simulate deformation, existing approaches represent 3D objects using polygonal meshes and deform…

Computer Vision and Pattern Recognition · Computer Science 2022-07-25 Boyang Deng , JP Lewis , Timothy Jeruzalski , Gerard Pons-Moll , Geoffrey Hinton , Mohammad Norouzi , Andrea Tagliasacchi

Quantized responses are important tools for understanding and characterizing the universal features of topological phases of matter. In this work, we consider a class of topological crystalline insulators in $3$D with $C_n$ lattice rotation…

Strongly Correlated Electrons · Physics 2023-06-07 Julian May-Mann , Mark R. Hirsbrunner , Xuchen Cao , Taylor L. Hughes

In this paper, we study the smooth isometric immersion of a complete, simply connected surface with a negative Gauss curvature into the three-dimensional Euclidean space. A fundamental and longstanding problem is to find a sufficient…

Differential Geometry · Mathematics 2024-09-24 Wentao Cao , Qing Han , Feimin Huang , Dehua Wang

We fully generalize a previously-developed computational geometry tool [1] to perform large-scale simulations of arbitrary two-dimensional faceted surfaces $z = h(x,y)$. Our method uses a three-component facet/edge/junction storage model,…

Mathematical Physics · Physics 2011-10-17 Scott A. Norris , Stephen J. Watson

Brownian dynamics of colloidal particles on complex surfaces has found important applications in diverse physical, chemical and biological processes. However, current Brownian dynamics simulation algorithms mostly work for relatively simple…

Soft Condensed Matter · Physics 2019-11-26 Yuguang Yang , Bo Li

We elucidate the geometric background of function-theoretic properties for the Gauss maps of several classes of immersed surfaces in three-dimensional space forms, for example, minimal surfaces in Euclidean three-space, improper affine…

Differential Geometry · Mathematics 2014-05-29 Yu Kawakami

Elastic filaments are vital to biological, physical and engineering systems, from cilia driving fluid in the lungs to artificial swimmers and micro-robotics. Simulating slender structures requires intricate balance of elastic, body, active,…

Biological Physics · Physics 2023-06-02 Paul Fuchter , Hermes Bloomfield-Gadêlha

Biomembranes adopt varying morphologies that are vital to cellular functions. Many studies use computational modeling to understand how various mechanochemical factors contribute to membrane shape transformations. Compared to…

Computational Engineering, Finance, and Science · Computer Science 2022-02-23 Cuncheng Zhu , Christopher T. Lee , Padmini Rangamani

We propose that scaling dimensions of d=3 conformal field theories can be studied on a system of qubits with near term quantum simulation platforms. Our proposal chooses couplings of quantum many-body problems on a polyhedral lattice at…

Strongly Correlated Electrons · Physics 2026-04-22 Hansen S. Wu , Ribhu K. Kaul

Reconstructing surfaces from normals is a key component of photometric stereo. This work introduces an adaptive surface triangulation in the image domain and afterwards performs the normal integration on a triangle mesh. Our key insight is…

Computer Vision and Pattern Recognition · Computer Science 2024-10-15 Moritz Heep , Eduard Zell

We propose a novel 3D shape correspondence method based on the iterative alignment of so-called smooth shells. Smooth shells define a series of coarse-to-fine shape approximations designed to work well with multiscale algorithms. The main…

Computer Vision and Pattern Recognition · Computer Science 2019-12-03 Marvin Eisenberger , Zorah Lähner , Daniel Cremers

We study the local equivalence problems of curves and surfaces in three dimensional Heisenberg group via Cartans method of moving frames and Lie groups, and find a complete set of invariants for curves and surfaces. For surfaces, in terms…

Differential Geometry · Mathematics 2013-01-29 Hung-Lin Chiu , Sin-Hua Lai

We introduce a fast and invertible approximation for data simulated as 2D planar meshes with connectivities along the poloidal dimension in deforming 3D toroidal (donut-like) spaces generated by fusion simulations. In fusion simulations,…

Graphics · Computer Science 2025-06-02 Congrong Ren , Hanqi Guo

Lipid vesicles appear ubiquitously in biological systems. Understanding how the mechanical and intermolecular interations deform vesicle membrane is a fundamental question in biophysics. In this article we developed a fast algorithm to…

Numerical Analysis · Mathematics 2014-11-17 Michael Mikucki , Y. C. Zhou

The dynamics of membranes, shells and capsules in fluid flow has become an active research area in computational physics and computational biology. The small thickness of these elastic materials enables their efficient approximation as a…

Computational Physics · Physics 2020-10-28 Marcel Mokbel , Sebastian Aland

Immersed boundary methods are extensively used for simulations of dynamic solid objects interacting with fluids due to their computational efficiency and modelling flexibility compared to body-fitted grid methods. However, thin geometries,…

Fluid Dynamics · Physics 2022-03-14 Marin Lauber , Gabriel D. Weymouth , Georges Limbert

A surface is often modeled as a triangulated mesh of 3D points and textures associated with faces of the mesh. The 3D points could be either sampled from range data or derived from a set of images using a stereo or Structure-from-Motion…

Computer Vision and Pattern Recognition · Computer Science 2022-06-14 Pragyana Mishra , Omead Amidi , Takeo Kanade