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Inferring synaptic connectivity from neural population activity is a fundamental challenge in computational neuroscience, complicated by partial observability and mismatches between inference models and true circuit dynamics. In this study,…

Neurons and Cognition · Quantitative Biology 2025-10-28 Kijung Yoon

Extracting informative representations of molecules using Graph neural networks (GNNs) is crucial in AI-driven drug discovery. Recently, the graph research community has been trying to replicate the success of self-supervised pretraining in…

Machine Learning · Computer Science 2022-11-03 Ruoxi Sun , Hanjun Dai , Adams Wei Yu

Graph-structured data is prevalent in many real-world applications, including social networks, financial systems, and molecular biology. Graph Neural Networks (GNNs) have become the de facto standard for learning from such data due to their…

Machine Learning · Computer Science 2025-07-29 Kunhao Li , Di Wu , Jun Bai , Jing Xu , Lei Yang , Ziyi Zhang , Yiliao Song , Wencheng Yang , Taotao Cai , Yan Li

Graph Neural Networks (GNNs) for prediction tasks like node classification or edge prediction have received increasing attention in recent machine learning from graphically structured data. However, a large quantity of labeled graphs is…

Machine Learning · Computer Science 2021-11-22 Yuexin Wu , Yichong Xu , Aarti Singh , Yiming Yang , Artur Dubrawski

Graph neural networks (GNNs) are designed to use attributed graphs to learn representations. Such representations are beneficial in the unsupervised learning of clusters and community detection. Nonetheless, such inference may reveal…

Machine Learning · Computer Science 2026-02-13 Dalyapraz Manatova , Pablo Moriano , L. Jean Camp

Deep neural networks (DNNs) remain largely opaque at inference time, limiting our ability to detect and diagnose malicious input manipulations such as adversarial examples. Existing detection methods predominantly rely on layer-local…

Cryptography and Security · Computer Science 2026-04-17 Firas Ben Hmida , Philemon Hailemariam , Kashif Ali Khan , Birhanu Eshete

Prompt learning is an effective paradigm that bridges gaps between the pre-training tasks and the corresponding downstream applications. Approaches based on this paradigm have achieved great transcendent results in various applications.…

Information Retrieval · Computer Science 2022-09-26 Zhigang Kan , Linhui Feng , Zhangyue Yin , Linbo Qiao , Xipeng Qiu , Dongsheng Li

With the increasing popularity of graph-based learning, graph neural networks (GNNs) emerge as the essential tool for gaining insights from graphs. However, unlike the conventional CNNs that have been extensively explored and exhaustively…

Machine Learning · Computer Science 2020-09-23 Boyuan Feng , Yuke Wang , Zheng Wang , Yufei Ding

Recently, graph neural networks (GNNs) have proved to be suitable in tasks on unstructured data. Particularly in tasks as community detection, node classification, and link prediction. However, most GNN models still operate with static…

Machine Learning · Computer Science 2019-06-07 Darwin Saire Pilco , Adín Ramírez Rivera

Time series forecasting is an extensively studied subject in statistics, economics, and computer science. Exploration of the correlation and causation among the variables in a multivariate time series shows promise in enhancing the…

Machine Learning · Computer Science 2021-04-22 Chao Shang , Jie Chen , Jinbo Bi

Graph Neural Networks (GNNs) have achieved state-of-the-art performance in various graph-based learning tasks. However, enabling privacy-preserving GNNs in encrypted domains, such as under Fully Homomorphic Encryption (FHE), typically…

Cryptography and Security · Computer Science 2025-07-15 Kaixiang Zhao , Joseph Yousry Attalla , Qian Lou , Yushun Dong

In this work, we propose the first backdoor attack to graph neural networks (GNN). Specifically, we propose a \emph{subgraph based backdoor attack} to GNN for graph classification. In our backdoor attack, a GNN classifier predicts an…

Cryptography and Security · Computer Science 2021-12-20 Zaixi Zhang , Jinyuan Jia , Binghui Wang , Neil Zhenqiang Gong

Graph Neural Networks (GNNs) have emerged as potent models for graph learning. Distributing the training process across multiple computing nodes is the most promising solution to address the challenges of ever-growing real-world graphs.…

Machine Learning · Computer Science 2024-05-13 Yuxiang Zhang , Xin Liu , Meng Wu , Wei Yan , Mingyu Yan , Xiaochun Ye , Dongrui Fan

Graph In-Context Learning, with the ability to adapt pre-trained graph models to novel and diverse downstream graphs without updating any parameters, has gained much attention in the community. The key to graph in-context learning is to…

Machine Learning · Computer Science 2025-05-06 Rui Lv , Zaixi Zhang , Kai Zhang , Qi Liu , Weibo Gao , Jiawei Liu , Jiaxia Yan , Linan Yue , Fangzhou Yao

Session-based recommendation systems suggest relevant items to users by modeling user behavior and preferences using short-term anonymous sessions. Existing methods leverage Graph Neural Networks (GNNs) that propagate and aggregate…

Information Retrieval · Computer Science 2022-01-10 Sai Mitheran , Abhinav Java , Surya Kant Sahu , Arshad Shaikh

\textit{Graph neural networks} (GNNs) are effective models for many dynamical systems consisting of entities and relations. Although most GNN applications assume a single type of entity and relation, many situations involve multiple types…

Machine Learning · Computer Science 2023-10-12 Ferran Alet , Erica Weng , Tomás Lozano Pérez , Leslie Pack Kaelbling

Graph Neural Networks (GNNs) have garnered intensive attention for Network Intrusion Detection System (NIDS) due to their suitability for representing the network traffic flows. However, most present GNN-based methods for NIDS are…

Machine Learning · Computer Science 2024-03-05 Renjie Xu , Guangwei Wu , Weiping Wang , Xing Gao , An He , Zhengpeng Zhang

Graph Neural Networks (GNNs) have been successful in modeling graph-structured data. However, similar to other machine learning models, GNNs can exhibit bias in predictions based on attributes like race and gender. Moreover, bias in GNNs…

Machine Learning · Computer Science 2025-08-21 Zengyi Wo , Chang Liu , Yumeng Wang , Minglai Shao , Wenjun Wang

Graph Neural Networks (GNNs) have demonstrated significant application potential in various fields. However, GNNs are still vulnerable to adversarial attacks. Numerous adversarial defense methods on GNNs are proposed to address the problem…

Social and Information Networks · Computer Science 2024-06-21 Tao Wu , Xinwen Cao , Chao Wang , Shaojie Qiao , Xingping Xian , Lin Yuan , Canyixing Cui , Yanbing Liu

The growing need for Trusted AI (TAI) highlights the importance of interpretability and robustness in machine learning models. However, many existing tools overlook graph data and rarely combine these two aspects into a single solution.…

Machine Learning · Computer Science 2026-03-23 Kirill Lukyanov , Mikhail Drobyshevskiy , Georgii Sazonov , Mikhail Soloviov , Ilya Makarov
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