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Polymer literature contains a large and growing body of experimental knowledge, yet much of it is buried in unstructured text and inconsistent terminology, making systematic retrieval and reasoning difficult. Existing tools typically…

Computational Engineering, Finance, and Science · Computer Science 2026-02-19 Sonakshi Gupta , Akhlak Mahmood , Wei Xiong , Rampi Ramprasad

Large language models (LLMs) are rapidly transforming various domains, including biomedicine and healthcare, and demonstrate remarkable potential from scientific research to new drug discovery. Graph-based retrieval-augmented generation…

Quantitative Methods · Quantitative Biology 2025-11-14 Guofeng Meng , Li Shen , Qiuyan Zhong , Wei Wang , Haizhou Zhang , Xiaozhen Wang

Reasoning on knowledge graph (KG) has been studied for explainable recommendation due to it's ability of providing explicit explanations. However, current KG-based explainable recommendation methods unfortunately ignore the temporal…

Information Retrieval · Computer Science 2022-05-17 Yuyue Zhao , Xiang Wang , Jiawei Chen , Yashen Wang , Wei Tang , Xiangnan He , Haiyong Xie

The number of biomedical research articles published has doubled in the past 20 years. Search engine based systems naturally center around searching, but researchers may not have a clear goal in mind, or the goal may be expressed in a query…

Digital Libraries · Computer Science 2017-10-25 Jessica Perrie , Yanqi Hao , Zack Hayat , Recep Colak , Kelly Lyons , Shankar Vembu , Sam Molyneux

Explainable recommendation has demonstrated significant advantages in informing users about the logic behind recommendations, thereby increasing system transparency, effectiveness, and trustworthiness. To provide personalized and…

Information Retrieval · Computer Science 2025-02-19 Yuhan Li , Xinni Zhang , Linhao Luo , Heng Chang , Yuxiang Ren , Irwin King , Jia Li

Representation learning is the first step in automating tasks such as research paper recommendation, classification, and retrieval. Due to the accelerating rate of research publication, together with the recognised benefits of…

Digital Libraries · Computer Science 2023-03-22 Eoghan Cunningham , Derek Greene

Recent studies have explored graph-based approaches to retrieval-augmented generation, leveraging structured or semi-structured information -- such as entities and their relations extracted from documents -- to enhance retrieval. However,…

Computation and Language · Computer Science 2025-07-24 Zhili Shen , Chenxin Diao , Pascual Merita , Pavlos Vougiouklis , Jeff Z. Pan

Replicating AI research is a crucial yet challenging task for large language model (LLM) agents. Existing approaches often struggle to generate executable code, primarily due to insufficient background knowledge and the limitations of…

Computation and Language · Computer Science 2026-04-21 Yujie Luo , Zhuoyun Yu , Xuehai Wang , Yuqi Zhu , Ningyu Zhang , Lanning Wei , Lun Du , Da Zheng , Huajun Chen

Graph-based Retrieval-Augmented Generation (RAG) has shown great capability in enhancing Large Language Model (LLM)'s answer with an external knowledge base. Compared to traditional RAG, it introduces a graph as an intermediate…

Information Retrieval · Computer Science 2025-06-18 Ke Wang , Bo Pan , Yingchaojie Feng , Yuwei Wu , Jieyi Chen , Minfeng Zhu , Wei Chen

The vast amount of biomedical information available today presents a significant challenge for investigators seeking to digest, process, and understand these findings effectively. Large Language Models (LLMs) have emerged as powerful tools…

Computation and Language · Computer Science 2024-07-19 Alexander R. Pelletier , Joseph Ramirez , Irsyad Adam , Simha Sankar , Yu Yan , Ding Wang , Dylan Steinecke , Wei Wang , Peipei Ping

Recent work on recommender systems has considered external knowledge graphs as valuable sources of information, not only to produce better recommendations but also to provide explanations of why the recommended items were chosen. Pure…

Information Retrieval · Computer Science 2020-07-28 Yikun Xian , Zuohui Fu , Qiaoying Huang , S. Muthukrishnan , Yongfeng Zhang

Generating user-friendly explanations regarding why an item is recommended has become increasingly common, largely due to advances in language generation technology, which can enhance user trust and facilitate more informed decision-making…

Information Retrieval · Computer Science 2024-01-04 Yucong Luo , Mingyue Cheng , Hao Zhang , Junyu Lu , Qi Liu , Enhong Chen

As science advances, the academic community has published millions of research papers. Researchers devote time and effort to search relevant manuscripts when writing a paper or simply to keep up with current research. In this paper, we…

Information Retrieval · Computer Science 2018-12-11 Haofeng Jia , Erik Saule

There has been rapid growth in biomedical literature, yet capturing the heterogeneity of the bibliographic information of these articles remains relatively understudied. Although graph mining research via heterogeneous graph neural networks…

Machine Learning · Computer Science 2023-08-28 Eric W Lee , Joyce C Ho

Online sellers and advertisers are recommended keyphrases for their listed products, which they bid on to enhance their sales. One popular paradigm that generates such recommendations is Extreme Multi-Label Classification (XMC), which…

Information Retrieval · Computer Science 2025-05-28 Ashirbad Mishra , Soumik Dey , Marshall Wu , Jinyu Zhao , He Yu , Kaichen Ni , Binbin Li , Kamesh Madduri

Deep learning based recommender systems have been extensively explored in recent years. However, the large number of models proposed each year poses a big challenge for both researchers and practitioners in reproducing the results for…

Information Retrieval · Computer Science 2019-05-28 Shuai Zhang , Yi Tay , Lina Yao , Bin Wu , Aixin Sun

Most of the existing medicine recommendation systems that are mainly based on electronic medical records (EMRs) are significantly assisting doctors to make better clinical decisions benefiting both patients and caregivers. Even though the…

Information Retrieval · Computer Science 2020-12-01 Fang Gong , Meng Wang , Haofen Wang , Sen Wang , Mengyue Liu

The challenges associated with large-scale user-item interaction graphs have attracted increasing attention in graph-based recommendation systems, primarily due to computational inefficiencies and inadequate information propagation.…

Information Retrieval · Computer Science 2025-11-25 Jiahao Liang , Haoran Yang , Xiangyu Zhao , Zhiwen Yu , Guandong Xu , Wanyu Wang , Kaixiang Yang

Finding relevant publications is important for scientists who have to cope with exponentially increasing numbers of scholarly material. Algorithms can help with this task as they help for music, movie, and product recommendations. However,…

Information Retrieval · Computer Science 2016-09-28 Titipat Achakulvisut , Daniel E. Acuna , Tulakan Ruangrong , Konrad Kording

Recipe recommendation systems play an essential role in helping people decide what to eat. Existing recipe recommendation systems typically focused on content-based or collaborative filtering approaches, ignoring the higher-order…

Information Retrieval · Computer Science 2022-05-30 Yijun Tian , Chuxu Zhang , Zhichun Guo , Chao Huang , Ronald Metoyer , Nitesh V. Chawla