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Heterogeneous graphs (HGs) are common in real-world scenarios and often exhibit heterophily. However, most existing studies focus on either heterogeneity or heterophily in isolation, overlooking the prevalence of heterophilic HGs in…

Machine Learning · Computer Science 2025-08-11 Qin Chen , Guojie Song

Since heterogeneity presents a fundamental challenge in graph federated learning, many existing methods are proposed to deal with node feature heterogeneity and structure heterogeneity. However, they overlook the critical homophily…

Machine Learning · Computer Science 2025-02-20 Wentao Yu

Polynomial graph filters have been widely used as guiding principles in the design of Graph Neural Networks (GNNs). Recently, the adaptive learning of the polynomial graph filters has demonstrated promising performance for modeling graph…

Machine Learning · Computer Science 2023-07-18 Wendi Yu , Zhichao Hou , Xiaorui Liu

Graph neural networks (GNNs) have struggled to outperform traditional optimization methods on combinatorial problems, limiting their practical impact. We address this gap by introducing a novel chaining procedure for the graph alignment…

Machine Learning · Computer Science 2025-10-06 Marc Lelarge

Over the past decade, Graph Neural Networks (GNNs) have achieved great success on machine learning tasks with relational data. However, recent studies have found that heterophily can cause significant performance degradation of GNNs,…

Machine Learning · Computer Science 2025-05-20 Sitao Luan , Qincheng Lu , Chenqing Hua , Xinyu Wang , Jiaqi Zhu , Xiao-Wen Chang

Owing to their remarkable representation capabilities for heterogeneous graph data, Heterogeneous Graph Neural Networks (HGNNs) have been widely adopted in many critical real-world domains such as recommendation systems and medical…

Machine Learning · Computer Science 2024-10-30 Dengke Han , Mingyu Yan , Xiaochun Ye , Dongrui Fan

Spectral graph convolutional neural networks (GCNNs) have been producing encouraging results in graph classification tasks. However, most spectral GCNNs utilize fixed graphs when aggregating node features, while omitting edge feature…

Computer Vision and Pattern Recognition · Computer Science 2022-10-06 Yang Yi , Xuequan Lu , Shang Gao , Antonio Robles-Kelly , Yuejie Zhang

Heterophily, or the tendency of connected nodes in networks to have different class labels or dissimilar features, has been identified as challenging for many Graph Neural Network (GNN) models. While the challenges of applying GNNs for node…

Machine Learning · Computer Science 2024-09-27 Jiong Zhu , Gaotang Li , Yao-An Yang , Jing Zhu , Xuehao Cui , Danai Koutra

Graph Neural Networks (GNNs) are characterized by their capacity of processing graph-structured data. However, due to the sparsity of labels under semi-supervised learning, they have been found to exhibit biased performance on specific…

Machine Learning · Computer Science 2025-12-16 Yihan Zhang

Graph Neural Networks (GNNs) are the subject of intense focus by the machine learning community for problems involving relational reasoning. GNNs can be broadly divided into spatial and spectral approaches. Spatial approaches use a form of…

Machine Learning · Statistics 2021-01-05 Kimberly Stachenfeld , Jonathan Godwin , Peter Battaglia

Graph neural networks (GNNs) provide powerful insights for brain neuroimaging technology from the view of graphical networks. However, most existing GNN-based models assume that the neuroimaging-produced brain connectome network is a…

Machine Learning · Computer Science 2022-09-30 Gen Shi , Yifan Zhu , Wenjin Liu , Quanming Yao , Xuesong Li

Learning dynamical systems that respect physical symmetries and constraints remains a fundamental challenge in data-driven modeling. Integrating physical laws with graph neural networks facilitates principled modeling of complex N-body…

Machine Learning · Computer Science 2026-04-16 Atamert Rahma , Chinmay Datar , Ana Cukarska , Felix Dietrich

Self-supervised learning has shown its promising capability in graph representation learning in recent work. Most existing pre-training strategies usually choose the popular Graph neural networks (GNNs), which can be seen as a special form…

Machine Learning · Computer Science 2023-06-16 Yilin Ding , Zhen Liu , Hao Hao

Graph Neural Networks (GNNs) have emerged as a notorious alternative to address learning problems dealing with non-Euclidean datasets. However, although most works assume that the graph is perfectly known, the observed topology is prone to…

Machine Learning · Computer Science 2023-12-12 Victor M. Tenorio , Samuel Rey , Antonio G. Marques

Graph Neural Networks (GNNs) have achieved remarkable performance by taking advantage of graph data. The success of GNN models always depends on rich features and adjacent relationships. However, in practice, such data are usually isolated…

Machine Learning · Computer Science 2020-11-09 Longfei Zheng , Jun Zhou , Chaochao Chen , Bingzhe Wu , Li Wang , Benyu Zhang

Graph Convolutional Networks (GCNs) are predominantly tailored for graphs displaying homophily, where similar nodes connect, but often fail on heterophilic graphs. The strategy of adopting distinct approaches to learn from homophilic and…

Machine Learning · Computer Science 2025-04-09 Han Lei , Jiaxing Xu , Xia Dong , Yiping Ke

Graph neural networks (GNNs) are a type of neural network capable of learning on graph-structured data. However, training GNNs on large-scale graphs is challenging due to iterative aggregations of high-dimensional features from neighboring…

Machine Learning · Computer Science 2024-09-18 Nikolai Merkel , Pierre Toussing , Ruben Mayer , Hans-Arno Jacobsen

Graph Neural Networks (GNNs) exhibit excellent performance when graphs have strong homophily property, i.e. connected nodes have the same labels. However, they perform poorly on heterophilic graphs. Several approaches address the issue of…

Machine Learning · Computer Science 2021-07-29 Vijay Lingam , Rahul Ragesh , Arun Iyer , Sundararajan Sellamanickam

Graph neural networks (GNNs) have significantly improved the representation power for graph-structured data. Despite of the recent success of GNNs, the graph convolution in most GNNs have two limitations. Since the graph convolution is…

Machine Learning · Computer Science 2021-12-30 Jinyoung Park , Sungdong Yoo , Jihwan Park , Hyunwoo J. Kim

The use of graph convolution in the development of recommender system algorithms has recently achieved state-of-the-art results in the collaborative filtering task (CF). While it has been demonstrated that the graph convolution operation is…

Information Retrieval · Computer Science 2023-05-31 Edoardo D'Amico , Aonghus Lawlor , Neil Hurley