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We consider numerical algorithms for the simulation of the rheology of two-dimensional vesicles suspended in a viscous Stokesian fluid. The vesicle evolution dynamics is governed by hydrodynamic and elastic forces. The elastic forces are…

Numerical Analysis · Mathematics 2015-06-17 Bryan Quaife , George Biros

We present an algorithm for simulating the equations of ideal magnetohydrodynamics and other systems of differential equations on an unstructured set of points represented by sample particles. The particles move with the fluid, so the time…

Instrumentation and Methods for Astrophysics · Physics 2015-05-30 Colin P. McNally , Jason L. Maron , Mordecai-Mark Mac Low

We consider the problem of inference for nonlinear, multivariate diffusion processes, satisfying It\^o stochastic differential equations (SDEs), using data at discrete times that may be incomplete and subject to measurement error. Our…

Computation · Statistics 2021-09-27 Andrew Golightly , Chris Sherlock

This paper describes a new Monte Carlo method based on a novel stochastic potential switching algorithm. This algorithm enables the equilibrium properties of a system with potential $V$ to be computed using a Monte Carlo simulation for a…

Statistical Mechanics · Physics 2007-05-23 C. H. Mak

The Metropolis-Hastings algorithm allows one to sample asymptotically from any probability distribution $\pi$. There has been recently much work devoted to the development of variants of the MH update which can handle scenarios where such…

Computation · Statistics 2018-03-28 Christophe Andrieu , Arnaud Doucet , Sinan Yıldırım , Nicolas Chopin

In this paper we report on what we believe is the first successful implementation of relativistic hydrodynamics, coupled to dynamical spacetimes, in spherical polar coordinates without symmetry assumptions. We employ a high-resolution…

General Relativity and Quantum Cosmology · Physics 2015-06-17 Pedro J. Montero , Thomas W. Baumgarte , Ewald Müller

In this work, we introduce an effective model for both ideal and viscous fluid dynamics within the framework of kinetic field theory (KFT). The main application we have in mind is cosmic structure formation where gaseous components need to…

Statistical Mechanics · Physics 2018-11-01 C. Viermann , J. T. Schneider , R. Lilow , F. Fabis , C. Littek , E. Kozlikin , M. Bartelmann

We present an improved Metropolis algorithm for arbitrary hard core systems in any dimensions. In the new updating scheme the conventional Metropolis step of a single particle is replaced by a collective step of a chain of particles. For…

Statistical Mechanics · Physics 2007-05-23 Andreas Jaster

Stokesian Dynamics (SD) is a numerical framework used for simulating hydrodynamic interactions in particle suspensions at low Reynolds number. It combines far-field approximations with near-field lubrication corrections, offering a balance…

Fluid Dynamics · Physics 2025-03-21 Kim William Torre , Joost de Graaf

Computational fluid dynamics is a crucial tool to theoretically explore the cosmos. In the last decade, we have seen a substantial methodological diversification with a number of cross-fertilizations between originally different methods.…

Instrumentation and Methods for Astrophysics · Physics 2023-01-25 Stephan Rosswog

We present the derivation of hydrodynamical equations for a perfect fluid in General Relativity, within the 3+1 decomposition of spacetime framework, using only primitive variables. Primitive variables are opposed to conserved variables, as…

General Relativity and Quantum Cosmology · Physics 2023-04-17 Gaël Servignat , Jerome Novak , Isabel Cordero-Carrión

The primary objective of this thesis is to develop a consistent theoretical framework of dissipative hydrodynamics for a relativistic fluid with spin - hereafter referred to as relativistic dissipative spin hydrodynamics. In this framework,…

High Energy Physics - Phenomenology · Physics 2025-12-25 Asaad Daher

The aim of this paper is to calculate the time dependence of the mean position (and orientation) of a fluid particle when a fluid system at thermodynamic equilibrium is submitted to a mechanical action. The starting point of this novel…

Soft Condensed Matter · Physics 2022-04-25 Frederic Aitken , Ferdinand Volino

In an experimental study of single enzyme reactions, it has been proposed that the rate constants of the enzymatic reactions fluctuate randomly, according to a given distribution. To quantify the uncertainty arising from random rate…

Quantitative Methods · Quantitative Biology 2012-02-07 Chia Ying Lee

Holm (Proc. Roy. Soc 2015) introduced a variational framework for stochastically parametrising unresolved scales of hydrodynamic motion. This variational framework preserves fundamental features of fluid dynamics, such as Kelvin's…

Fluid Dynamics · Physics 2021-03-03 Darryl D Holm , Erwin Luesink

We present a new approach to Eulerian computational fluid dynamics that is designed to work at high Mach numbers encountered in astrophysical hydrodynamic simulations. The Eulerian fluid conservation equations are solved in an adaptive…

Astrophysics · Physics 2009-11-10 Hy Trac , Ue-Li Pen

The (viscous) anisotropic hydrodynamic approach, especially after perturbative inclusion of all residual viscous terms, has been shown to dramatically outperform viscous hydrodynamics in several simplified situations for which exact…

Nuclear Theory · Physics 2018-03-14 Dennis Bazow , Ulrich W. Heinz , Michael Strickland

The Metropolis implementation of the Monte Carlo algorithm has been developed to study the equilibrium thermodynamics of many-body systems. Choosing small trial moves, the trajectories obtained applying this algorithm agree with those…

Other Quantitative Biology · Quantitative Biology 2009-11-13 G. Tiana , L. Sutto , R. A. Broglia

We construct a discrete model of fluid particles according to the GENERIC formalism. The model has the form of Smoothed Particle Hydrodynamics including correct thermal fluctuations. A slight variation of the model reproduces the…

Statistical Mechanics · Physics 2009-10-31 Pep Español , Hans Christian Öttinger

We generalize the derivation of viscous anisotropic hydrodynamics from kinetic theory to allow for non-zero particle masses. The macroscopic theory is obtained by taking moments of the Boltzmann equation after expanding the distribution…

Nuclear Theory · Physics 2015-03-26 Dennis Bazow , Ulrich W. Heinz , Mauricio Martinez