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Deep learning methods employ multiple processing layers to learn hierarchical representations of data and have produced state-of-the-art results in many domains. Recently, a variety of model designs and methods have blossomed in the context…

Computation and Language · Computer Science 2018-11-27 Tom Young , Devamanyu Hazarika , Soujanya Poria , Erik Cambria

The paradigm of large language models in natural language processing (NLP) has also shown promise in modeling biological languages, including proteins, RNA, and DNA. Both the auto-regressive generation paradigm and evaluation metrics have…

Biomolecules · Quantitative Biology 2025-07-04 Ke Liu , Shuaike Shen , Hao Chen

Neural network models have achieved state-of-the-art performances in a wide range of natural language processing (NLP) tasks. However, a long-standing criticism against neural network models is the lack of interpretability, which not only…

Computation and Language · Computer Science 2021-10-26 Xiaofei Sun , Diyi Yang , Xiaoya Li , Tianwei Zhang , Yuxian Meng , Han Qiu , Guoyin Wang , Eduard Hovy , Jiwei Li

Transformer-based language models have revolutionized the field of natural language processing (NLP). However, using these models often involves navigating multiple frameworks and tools, as well as writing repetitive boilerplate code. This…

Computation and Language · Computer Science 2025-04-15 Rabindra Lamsal , Maria Rodriguez Read , Shanika Karunasekera

Many NLP applications require models to be interpretable. However, many successful neural architectures, including transformers, still lack effective interpretation methods. A possible solution could rely on building explanations from…

Computation and Language · Computer Science 2024-04-04 Federico Ruggeri , Marco Lippi , Paolo Torroni

Transformers have made significant strides across various artificial intelligence domains, including natural language processing, computer vision, and audio processing. This success has naturally garnered considerable interest from both…

Image and Video Processing · Electrical Eng. & Systems 2024-08-12 Elyas Rashno , Amir Eskandari , Aman Anand , Farhana Zulkernine

The dominating NLP paradigm of training a strong neural predictor to perform one task on a specific dataset has led to state-of-the-art performance in a variety of applications (eg. sentiment classification, span-prediction based question…

Computation and Language · Computer Science 2021-09-06 Paul Michel

Objectives: The vast and complex nature of human genomic sequencing data presents challenges for effective analysis. This review aims to investigate the application of Natural Language Processing (NLP) techniques, particularly Large…

Genomics · Quantitative Biology 2025-02-28 Shuyan Cheng , Yishu Wei , Yiliang Zhou , Zihan Xu , Drew N Wright , Jinze Liu , Yifan Peng

Large Language Models (LLMs) are revolutionizing bioinformatics, enabling advanced analysis of DNA, RNA, proteins, and single-cell data. This survey provides a systematic review of recent advancements, focusing on genomic sequence modeling,…

Computation and Language · Computer Science 2026-03-03 Zhenyu Wang , Zikang Wang , Jiyue Jiang , Pengan Chen , Xiangyu Shi , Yu Li

Linguistic typology aims to capture structural and semantic variation across the world's languages. A large-scale typology could provide excellent guidance for multilingual Natural Language Processing (NLP), particularly for languages that…

Computation and Language · Computer Science 2020-10-28 Edoardo Maria Ponti , Helen O'Horan , Yevgeni Berzak , Ivan Vulić , Roi Reichart , Thierry Poibeau , Ekaterina Shutova , Anna Korhonen

Transformers have dominated the field of natural language processing, and recently impacted the computer vision area. In the field of medical image analysis, Transformers have also been successfully applied to full-stack clinical…

Computer Vision and Pattern Recognition · Computer Science 2022-08-22 Kelei He , Chen Gan , Zhuoyuan Li , Islem Rekik , Zihao Yin , Wen Ji , Yang Gao , Qian Wang , Junfeng Zhang , Dinggang Shen

Recent advancements in specialized large-scale architectures for training image and language have profoundly impacted the field of computer vision and natural language processing (NLP). Language models, such as the recent ChatGPT and GPT4…

Biomolecules · Quantitative Biology 2023-05-04 Sergio Romero-Romero , Sebastian Lindner , Noelia Ferruz

Transformer is a state-of-the-art model in the field of natural language processing (NLP). Current NLP models primarily increase the number of transformers to improve processing performance. However, this technique requires a lot of…

Computation and Language · Computer Science 2023-10-18 Woohyeon Moon , Taeyoung Kim , Bumgeun Park , Dongsoo Har

In recent years, transformer-based language models have achieved state of the art performance in various NLP benchmarks. These models are able to extract mostly distributional information with some semantics from unstructured text, however…

Computation and Language · Computer Science 2021-02-08 Pedro Colon-Hernandez , Catherine Havasi , Jason Alonso , Matthew Huggins , Cynthia Breazeal

Transformer architecture has become ubiquitous in the natural language processing field. To interpret the Transformer-based models, their attention patterns have been extensively analyzed. However, the Transformer architecture is not only…

Computation and Language · Computer Science 2021-09-16 Goro Kobayashi , Tatsuki Kuribayashi , Sho Yokoi , Kentaro Inui

State-of-the-art deep-learning-based approaches to Natural Language Processing (NLP) are credited with various capabilities that involve reasoning with natural language texts. In this paper we carry out a large-scale empirical study…

Computation and Language · Computer Science 2022-11-11 Viktor Schlegel , Kamen V. Pavlov , Ian Pratt-Hartmann

The rapid advancement of Transformer-based models has reshaped the landscape of uncrewed aerial vehicle (UAV) systems by enhancing perception, decision-making, and autonomy. This review paper systematically categorizes and evaluates recent…

Computer Vision and Pattern Recognition · Computer Science 2025-08-19 Hamza Kheddar , Yassine Habchi , Mohamed Chahine Ghanem , Mustapha Hemis , Dusit Niyato

Transformer-based language models (TLMs) have widely been recognized to be a cutting-edge technology for the successful development of deep-learning-based solutions to problems and applications that require natural language processing and…

Computation and Language · Computer Science 2024-02-06 Candida M. Greco , Andrea Tagarelli

The remarkable performance of the Transformer architecture in natural language processing has recently also triggered broad interest in Computer Vision. Among other merits, Transformers are witnessed as capable of learning long-range…

Computer Vision and Pattern Recognition · Computer Science 2023-11-07 Reza Azad , Amirhossein Kazerouni , Moein Heidari , Ehsan Khodapanah Aghdam , Amirali Molaei , Yiwei Jia , Abin Jose , Rijo Roy , Dorit Merhof

Distributional semantics based on neural approaches is a cornerstone of Natural Language Processing, with surprising connections to human meaning representation as well. Recent Transformer-based Language Models have proven capable of…

Computation and Language · Computer Science 2022-04-04 Daniel Loureiro , Alípio Mário Jorge , Jose Camacho-Collados