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Deep neural networks have become the go-to method for biomedical instance segmentation. Generalist models like Cellpose demonstrate state-of-the-art performance across diverse cellular data, though their effectiveness often degrades on…

Computer Vision and Pattern Recognition · Computer Science 2025-08-18 Fabian H. Reith , Jannik Franzen , Dinesh R. Palli , J. Lorenz Rumberger , Dagmar Kainmueller

Active learning enhances annotation efficiency by selecting the most revealing samples for labeling, thereby reducing reliance on extensive human input. Previous methods in semantic segmentation have centered on individual pixels or small…

Computer Vision and Pattern Recognition · Computer Science 2025-08-07 Jinchao Ge , Zeyu Zhang , Minh Hieu Phan , Bowen Zhang , Akide Liu , Yang Zhao , Shuwen Zhao

Single-cell RNA sequencing (scRNA-seq) technology enables systematic delineation of cellular states and interactions, providing crucial insights into cellular heterogeneity. Building on this potential, numerous computational methods have…

Genomics · Quantitative Biology 2025-11-11 Ping Xu , Zaitian Wang , Zhirui Wang , Pengjiang Li , Ran Zhang , Gaoyang Li , Hanyu Xie , Jiajia Wang , Yuanchun Zhou , Pengfei Wang

Supervised person re-identification (re-id) approaches require a large amount of pairwise manual labeled data, which is not applicable in most real-world scenarios for re-id deployment. On the other hand, unsupervised re-id methods rely on…

Computer Vision and Pattern Recognition · Computer Science 2021-12-28 Wenjing Gao , Minxian Li

Weed species classification represents an important step for the development of automated targeting systems that allow the adoption of precision agriculture practices. To reduce costs and yield losses caused by their presence. The…

Computer Vision and Pattern Recognition · Computer Science 2025-10-14 Farouq Benchallal , Adel Hafiane , Nicolas Ragot , Raphael Canals

We present a new method for functional tissue unit segmentation at the cellular level, which utilizes the latest deep learning semantic segmentation approaches together with domain adaptation and semi-supervised learning techniques. This…

Image and Video Processing · Electrical Eng. & Systems 2023-12-14 Volodymyr Sydorskyi , Igor Krashenyi , Denis Sakva , Oleksandr Zarichkovyi

Many studies in data mining have proposed a new learning called semi-Supervised. Such type of learning combines unlabeled and labeled data which are hard to obtain. However, in unsupervised methods, the only unlabeled data are used. The…

Machine Learning · Computer Science 2013-04-16 Badreddine Meftahi , Ourida Ben Boubaker Saidi

We propose a flexible Semi-Automatic Labeling Tool (SALT) for general LiDAR point clouds with cross-scene adaptability and 4D consistency. Unlike recent approaches that rely on camera distillation, SALT operates directly on raw LiDAR data,…

Computer Vision and Pattern Recognition · Computer Science 2025-06-24 Yanbo Wang , Yongtao Chen , Chuan Cao , Tianchen Deng , Wentao Zhao , Jingchuan Wang , Weidong Chen

Semi-supervised anomaly detection methods leverage a few anomaly examples to yield drastically improved performance compared to unsupervised models. However, they still suffer from two limitations: 1) unlabeled anomalies (i.e., anomaly…

Machine Learning · Computer Science 2023-07-26 Hongzuo Xu , Yijie Wang , Guansong Pang , Songlei Jian , Ning Liu , Yongjun Wang

We seek to enable classic processing of continuous ultra-sparse spatiotemporal data generated by event-based sensors with dense machine learning models. We propose a novel hybrid pipeline composed of asynchronous sensing and synchronous…

Computer Vision and Pattern Recognition · Computer Science 2024-07-31 Carmen Martin-Turrero , Maxence Bouvier , Manuel Breitenstein , Pietro Zanuttigh , Vincent Parret

Drawing inspiration from the outstanding learning capability of our human brains, Hyperdimensional Computing (HDC) emerges as a novel computing paradigm, and it leverages high-dimensional vector presentation and operations for brain-like…

With ongoing developments and innovations in single-cell RNA sequencing methods, advancements in sequencing performance could empower significant discoveries as well as new emerging possibilities to address biological and medical…

Applications · Statistics 2019-12-19 Jiawei Long , Yu Xia

Annotating histopathological images is a time-consuming andlabor-intensive process, which requires broad-certificated pathologistscarefully examining large-scale whole-slide images from cells to tissues.Recent frontiers of transfer learning…

Computer Vision and Pattern Recognition · Computer Science 2020-08-24 Dou Xu , Chang Cai , Chaowei Fang , Bin Kong , Jihua Zhu , Zhongyu Li

Supervised quantum learning is an emergent multidisciplinary domain bridging between variational quantum algorithms and classical machine learning. Here, we study experimentally a hybrid classifier model accelerated by a quantum simulator -…

The recent success of learning-based algorithms can be greatly attributed to the immense amount of annotated data used for training. Yet, many datasets lack annotations due to the high costs associated with labeling, resulting in degraded…

Image and Video Processing · Electrical Eng. & Systems 2023-12-27 Dana Cohen Hochberg , Hayit Greenspan , Raja Giryes

Transformers achieve strong performance across diverse domains but implicitly assume Euclidean geometry in their attention mechanisms, limiting their effectiveness on data with non-Euclidean structure. While recent extensions to hyperbolic…

Machine Learning · Computer Science 2025-10-03 Ryan Y. Lin , Siddhartha Ojha , Nicholas Bai

Throughout the world, breast cancer is one of the leading causes of female death. Recently, deep learning methods are developed to automatically grade breast cancer of histological slides. However, the performance of existing deep learning…

Computer Vision and Pattern Recognition · Computer Science 2022-03-09 Yanyuet Man , Xiangyun Ding , Xingcheng Yao , Han Bao

Brain tumor segmentation is important for diagnosis of the tumor, and current deep-learning methods rely on a large set of annotated images for training, with high annotation costs. Unsupervised segmentation is promising to avoid human…

Computer Vision and Pattern Recognition · Computer Science 2025-01-28 Xiaochuan Ma , Jia Fu , Wenjun Liao , Shichuan Zhang , Guotai Wang

Cell detection in histopathology images is of great value in clinical practice. \textit{Convolutional neural networks} (CNNs) have been applied to cell detection to improve the detection accuracy, where cell annotations are required for…

Computer Vision and Pattern Recognition · Computer Science 2021-07-01 Zipei Zhao , Fengqian Pang , Zhiwen Liu , Chuyang Ye

HybridQC is an R package that streamlines quality control (QC) of single-cell RNA sequencing (scRNA-seq) data by combining traditional threshold-based filtering with machine learning-based outlier detection. It provides an efficient and…

Genomics · Quantitative Biology 2025-07-14 Kaitao Lai