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A tandem duplication denotes the process of inserting a copy of a segment of DNA adjacent to its original position. More formally, a tandem duplication can be thought of as an operation that converts a string $S = AXB$ into a string $T =…

Computational Complexity · Computer Science 2021-03-16 Ferdinando Cicalese , Nicolò Pilati

We investigate regular realizability (RR) problems, which are the problems of verifying whether intersection of a regular language -- the input of the problem -- and fixed language called filter is non-empty. In this paper we focus on the…

Formal Languages and Automata Theory · Computer Science 2015-04-23 Alexander A. Rubtsov , Mikhail N. Vyalyi

The purpose of this article is to examine and limit the conditions in which the P complexity class could be equivalent to the NP complexity class. Proof is provided by demonstrating that as the number of clauses in a NP-complete problem…

Computational Complexity · Computer Science 2008-09-07 Jerrald Meek

The Shortest Common Superstring problem (SCS) consists, for a set of strings S = {s_1,...,s_n}, in finding a minimum length string that contains all s_i, 1<= i <= n, as substrings. While a 2+11/30 approximation ratio algorithm has recently…

Data Structures and Algorithms · Computer Science 2018-05-02 Tristan Braquelaire , Marie Gasparoux , Mathieu Raffinot , Raluca Uricaru

In this paper the problem of selecting $p$ out of $n$ available items is discussed, such that their total cost is minimized. We assume that costs are not known exactly, but stem from a set of possible outcomes. Robust recoverable and…

Optimization and Control · Mathematics 2017-02-17 André Chassein , Marc Goerigk , Adam Kasperski , Paweł Zieliński

By adapting the iterative yardstick construction of Stockmeyer, we show that the reachability problem for vector addition systems with a stack does not have elementary complexity. As a corollary, the same lower bound holds for the…

Formal Languages and Automata Theory · Computer Science 2013-10-08 Ranko Lazic

In the first part of this paper we introduced an algorithm that uses reachable set approximation to approximate the minimum time function of linear control problems. To illustrate the error estimates and to demonstrate differences to other…

Optimization and Control · Mathematics 2016-01-01 Robert Baier , Thuy Thi Thien Le

The pairwise reachability problem for a multi-threaded program asks, given control locations in two threads, whether they can be simultaneously reached in an execution of the program. The problem is important for static analysis and is used…

Logic in Computer Science · Computer Science 2015-07-01 Remi Bonnet , Rohit Chadha , Mahesh Viswanathan , P. Madhusudan

Motivated by computing duplication patterns in sequences, a new fundamental problem called the longest subsequence-repeated subsequence (LSRS) is proposed. Given a sequence $S$ of length $n$, a letter-repeated subsequence is a subsequence…

Data Structures and Algorithms · Computer Science 2023-09-01 Manuel Lafond , Wenfeng Lai , Adiesha Liyanage , Binhai Zhu

Document listing on string collections is the task of finding all documents where a pattern appears. It is regarded as the most fundamental document retrieval problem, and is useful in various applications. Many of the fastest-growing…

Data Structures and Algorithms · Computer Science 2019-02-21 Dustin Cobas , Gonzalo Navarro

We consider the computational complexity of reconfiguration problems, in which one is given two combinatorial configurations satisfying some constraints, and is asked to transform one into the other using elementary transformations, while…

Computational Complexity · Computer Science 2020-01-17 Jean Cardinal , Erik D. Demaine , David Eppstein , Robert A. Hearn , Andrew Winslow

A word is called a reset word for a deterministic finite automaton if it maps all the states of the automaton to a unique state. Deciding about the existence of a reset word of a given maximum length for a given automaton is known to be an…

Formal Languages and Automata Theory · Computer Science 2014-09-09 Vojtěch Vorel

We study decidability and complexity questions related to a continuous analogue of the Skolem-Pisot problem concerning the zeros and nonnegativity of a linear recurrent sequence. In particular, we show that the continuous version of the…

Dynamical Systems · Mathematics 2009-04-23 Paul Bell , Jean-Charles Delvenne , Raphael Jungers , Vincent D. Blondel

This paper depicts algorithms for solving the decision Boolean Satisfiability Problem. An extreme problem is formulated to analyze the complexity of algorithms and the complexity for solving it. A novel and easy reformulation as a lottery…

Computational Complexity · Computer Science 2016-04-15 Carlos Barrón-Romero

Let us call a sequence of numbers heapable if they can be sequentially inserted to form a binary tree with the heap property, where each insertion subsequent to the first occurs at a leaf of the tree, i.e. below a previously placed number.…

Data Structures and Algorithms · Computer Science 2010-07-15 John Byers , Brent Heeringa , Michael Mitzenmacher , Georgios Zervas

Program analysis and verification require decision procedures to reason on theories of data structures. Many problems can be reduced to the satisfiability of sets of ground literals in theory T. If a sound and complete inference system for…

Artificial Intelligence · Computer Science 2015-02-11 Alessandro Armando , Maria Paola Bonacina , Silvio Ranise , Stephan Schulz

Logically constrained term rewriting is a relatively new rewriting formalism that naturally supports built-in data structures, such as integers and bit vectors. In the analysis of logically constrained term rewrite systems (LCTRSs),…

Logic in Computer Science · Computer Science 2025-12-16 Kanta Takahata , Jonas Schöpf , Naoki Nishida , Takahito Aoto

The workflow satisfiability problem is concerned with determining whether it is possible to find an allocation of authorized users to the steps in a workflow in such a way that all constraints are satisfied. The problem is NP-hard in…

Cryptography and Security · Computer Science 2012-10-16 J. Crampton , R. Crowston , G. Gutin , M. Jones , M. S. Ramanujan

The realizability problem is a well-known problem in the analysis of complex systems, which can be modeled as an infinite-dimensional moment problem. More precisely, as a truncated $K-$moment problem where $K$ is the space of all possible…

Probability · Mathematics 2023-05-18 Raúl E. Curto , Maria Infusino

We consider the hardness of approximation of optimization problems from the point of view of definability. For many NP-hard optimization problems it is known that, unless P = NP, no polynomial-time algorithm can give an approximate solution…

Logic in Computer Science · Computer Science 2019-08-30 Albert Atserias , Anuj Dawar