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Biomolecular structure comparison not only reveals evolutionary relationships, but also sheds light on biological functional properties. However, traditional definitions of structure or sequence similarity always involve superposition or…

Quantitative Methods · Quantitative Biology 2017-07-13 Kelin Xia

We redevelop persistent homology (topological persistence) from a categorical point of view. The main objects of study are diagrams, indexed by the poset of real numbers, in some target category. The set of such diagrams has an interleaving…

Algebraic Topology · Mathematics 2014-05-13 Peter Bubenik , Jonathan A. Scott

A method to apply and visualize persistent homology of time series is proposed. The method captures persistent features in space and time, in contrast to the existing procedures, where one usually chooses one while keeping the other fixed.…

Algebraic Topology · Mathematics 2024-12-17 Martina Flammer , Knut Hüper

The geometry of neurons is known to be important for their functions. Hence, neurons are often classified by their morphology. Two recent methods, persistent homology and the topological morphology descriptor, assign a morphology descriptor…

Neurons and Cognition · Quantitative Biology 2022-04-08 David Beers , Despoina Goniotaki , Diane P. Hanger , Alain Goriely , Heather A. Harrington

We introduce and investigate notions of persistent homology for p-groups and for coclass trees of p-groups. Using computer techniques we show that persistent homology provides fairly strong homological invariants for p-groups of order at…

Group Theory · Mathematics 2012-10-25 Graham Ellis , Simon A. King

In this paper, we introduce a novel persistence framework for Morse decompositions in Markov chains using combinatorial multivector fields. Our approach provides a structured method to analyze recurrence and stability in finite-state…

Dynamical Systems · Mathematics 2025-03-31 Donald Woukeng

Multigraded Betti numbers are one of the simplest invariants of multiparameter persistence modules. This invariant is useful in theory -- it completely determines the Hilbert function of the module and the isomorphism type of the free…

Algebraic Topology · Mathematics 2024-02-08 Steve Oudot , Luis Scoccola

We introduce ballot matrices, a signed combinatorial structure whose definition naturally follows from the generating function for labeled interval orders. A sign reversing involution on ballot matrices is defined. We show that matrices…

Combinatorics · Mathematics 2014-10-22 Anders Claesson , Stuart A. Hannah

The aim of this article is to describe a new perspective on functoriality of persistent homology and explain its intrinsic symmetry that is often overlooked. A data set for us is a finite collection of functions, called measurements, with a…

Algebraic Topology · Mathematics 2020-05-26 Wojciech Chacholski , Alessandro De Gregorio , Nicola Quercioli , Francesca Tombari

For some involutive maps $\Phi:{\mathbb C}P^1 \times {\mathbb C}P^1 \to {\mathbb C}P^1 \times {\mathbb C}P^1$ we find all invariants with separated variables. We investigate a link of the maps and their invariants with separated variables…

Exactly Solvable and Integrable Systems · Physics 2019-08-06 Pavlos Kassotakis , Maciej Nieszporski

Persistent homology provides information about the lifetime of homology classes along a filtration of cell complexes. Persistence barcode is a graphical representation of such information. A filtration might be determined by time in a set…

Computer Vision and Pattern Recognition · Computer Science 2018-01-04 Rocio Gonzalez-Diaz , Maria-Jose Jimenez , Belen Medrano

Invariants withstand transformations and, therefore, represent the essence of objects or phenomena. In mathematics, transformations often constitute a group action. Since the 19th century, studying the structure of various types of…

Symbolic Computation · Computer Science 2024-12-19 Irina A. Kogan

Multidimensional persistence has been proposed to study the persistence of topological features in data indexed by multiple parameters. In this work, we further explore its algebraic complications from the point of view of higher…

Representation Theory · Mathematics 2020-12-07 Mickaël Buchet , Emerson G. Escolar

In medical image analysis, feature engineering plays an important role in the design and performance of machine learning models. Persistent homology (PH), from the field of topological data analysis (TDA), demonstrates robustness and…

Computer Vision and Pattern Recognition · Computer Science 2025-06-05 Dashti A. Ali , Richard K. G. Do , William R. Jarnagin , Aras T. Asaad , Amber L. Simpson

Persistent Topology studies topological features of shapes by analyzing the lower level sets of suitable functions, called filtering functions, and encoding the arising information in a parameterized version of the Betti numbers, i.e. the…

Algebraic Topology · Mathematics 2010-05-05 Andrea Cerri , Patrizio Frosini

Persistent homology, a technique from computational topology, has recently shown strong empirical performance in the context of graph classification. Being able to capture long range graph properties via higher-order topological features,…

Machine Learning · Computer Science 2024-12-20 Rubén Ballester , Bastian Rieck

We propose a functorial framework for persistent homology based on finite topological spaces and their associated posets. Starting from a finite metric space, we associate a filtration of finite topologies whose structure maps are…

Algebraic Topology · Mathematics 2026-02-24 Selçuk Kayacan

Lusztig used the symbol invariant to describe the Springer correspondence for classical groups. Similarly, the fingerprint invariant can describe the Kazhdan-Lusztig map. Both invariants pertain to rigid semisimple operators labeled by…

Representation Theory · Mathematics 2024-07-02 Chuanzhong Li , Bao Shou

In many applications concerning the comparison of data expressed by $\mathbb{R}^m$-valued functions defined on a topological space $X$, the invariance with respect to a given group $G$ of self-homeomorphisms of $X$ is required. While…

Algebraic Topology · Mathematics 2016-01-29 Patrizio Frosini , Grzegorz Jablonski

Persistent homology (PH) has been widely applied to graph data to extract topological features. However, little attention has been paid to how different distance functions on a graph affect the resulting persistence barcodes and their…

Algebraic Topology · Mathematics 2026-02-17 Eunwoo Heo , Byeongchan Choi , Jae-Hun Jung
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