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Inferring causal links or subgraphs corresponding to a specific phenotype or label based solely on measured data is an important yet challenging task, which is also different from inferring causal nodes. While Graph Neural Network (GNN)…

Computational Engineering, Finance, and Science · Computer Science 2024-07-30 Qibin Zhang , Chengshang Lyu , Lingxi Chen , Qiqi Jin , Luonan Chen

Community detection is crucial for applications like targeted marketing and recommendation systems. Traditional methods rely on network structure, and embedding-based models integrate semantic information. However, there is a challenge when…

Social and Information Networks · Computer Science 2026-01-09 Heba Zahran , M. Omair Shafiq

Graph collaborative filtering (GCF) has gained considerable attention in recommendation systems by leveraging graph learning techniques to enhance collaborative filtering (CF). One classical approach in GCF is to learn user and item…

Information Retrieval · Computer Science 2024-04-09 Xiangmeng Wang , Qian Li , Dianer Yu , Wei Huang , Guandong Xu

Treatment effect estimation can assist in effective decision-making in e-commerce, medicine, and education. One popular application of this estimation lies in the prediction of the impact of a treatment (e.g., a promotion) on an outcome…

Machine Learning · Computer Science 2023-09-26 Xiaofeng Lin , Guoxi Zhang , Xiaotian Lu , Han Bao , Koh Takeuchi , Hisashi Kashima

In this work, we study the problem of partitioning a set of graphs into different groups such that the graphs in the same group are similar while the graphs in different groups are dissimilar. This problem was rarely studied previously,…

Machine Learning · Computer Science 2023-02-07 Jinyu Cai , Yi Han , Wenzhong Guo , Jicong Fan

We address the problem of disentangled representation learning with independent latent factors in graph convolutional networks (GCNs). The current methods usually learn node representation by describing its neighborhood as a perceptual…

Machine Learning · Computer Science 2019-11-27 Yanbei Liu , Xiao Wang , Shu Wu , Zhitao Xiao

Performing causal inference in observational studies requires we assume confounding variables are correctly adjusted for. G-computation methods are often used in these scenarios, with several recent proposals using Bayesian versions of…

Methodology · Statistics 2021-10-25 Daniel Daly-Grafstein , Paul Gustafson

Disentangled representation learning has recently attracted a significant amount of attention, particularly in the field of image representation learning. However, learning the disentangled representations behind a graph remains largely…

Machine Learning · Computer Science 2020-06-11 Xiaojie Guo , Liang Zhao , Zhao Qin , Lingfei Wu , Amarda Shehu , Yanfang Ye

Existing graph learning-based cognitive diagnosis (CD) methods have made relatively good results, but their student, exercise, and concept representations are learned and exchanged in an implicit unified graph, which makes the…

Machine Learning · Computer Science 2024-10-24 Shangshang Yang , Mingyang Chen , Ziwen Wang , Xiaoshan Yu , Panpan Zhang , Haiping Ma , Xingyi Zhang

Algorithms for constraint-based causal discovery select graphical causal models among a space of possible candidates (e.g., all directed acyclic graphs) by executing a sequence of conditional independence tests. These may be used to inform…

Methodology · Statistics 2025-09-19 Ting-Hsuan Chang , Zijian Guo , Daniel Malinsky

Graph clustering discovers groups or communities within networks. Deep learning methods such as autoencoders (AE) extract effective clustering and downstream representations but cannot incorporate rich structural information. While Graph…

Machine Learning · Computer Science 2022-04-28 Gayan K. Kulatilleke , Marius Portmann , Shekhar S. Chandra

We propose a novel technique to enhance Knowledge Graph Reasoning by combining Graph Convolution Neural Network (GCN) with the Attention Mechanism. This approach utilizes the Attention Mechanism to examine the relationships between entities…

Information Retrieval · Computer Science 2025-03-24 Meera Gupta , Ravi Khanna , Divya Choudhary , Nandini Rao

Biomarker discovery from high-throughput transcriptomic data is crucial for advancing precision medicine. However, existing methods often neglect gene-gene regulatory relationships and lack stability across datasets, leading to conflation…

Quantitative Methods · Quantitative Biology 2025-11-18 Chaowang Lan , Jingxin Wu , Yulong Yuan , Chuxun Liu , Huangyi Kang , Caihua Liu

Causality inference is prone to spurious causal interactions, due to the substantial confounders in a complex system. While many existing methods based on the statistical methods or dynamical methods attempt to address misidentification…

Machine Learning · Computer Science 2024-08-13 Jinling Yan , Shao-Wu Zhang , Chihao Zhang , Weitian Huang , Jifan Shi , Luonan Chen

Deep graph clustering (DGC) for attribute-missing graphs is an unsupervised task aimed at partitioning nodes with incomplete attributes into distinct clusters. Addressing this challenging issue is vital for practical applications. However,…

Machine Learning · Computer Science 2025-08-06 Yaowen Hu , Wenxuan Tu , Yue Liu , Miaomiao Li , Wenpeng Lu , Zhigang Luo , Xinwang Liu , Ping Chen

Graph clustering is essential in graph analysis for revealing structural patterns and node communities. Despite recent advances in self-supervised contrastive learning that have improved clustering via structural and attribute signals,…

Machine Learning · Computer Science 2026-05-28 Lei Zhang , Fubo Sun , Haipeng Yang , Zhong Guan , Likang Wu

We study the problem of learning conditional average treatment effects (CATE) from high-dimensional, observational data with unobserved confounders. Unobserved confounders introduce ignorance -- a level of unidentifiability -- about an…

Machine Learning · Computer Science 2022-02-02 Andrew Jesson , Sören Mindermann , Yarin Gal , Uri Shalit

Causal discovery aims to recover graphs that represent causal relations among given variables from observations, and new methods are constantly being proposed. Increasingly, the community raises questions about how much progress is made,…

Machine Learning · Computer Science 2025-10-30 Zhufeng Li , Niki Kilbertus

The combination of the traditional convolutional network (i.e., an auto-encoder) and the graph convolutional network has attracted much attention in clustering, in which the auto-encoder extracts the node attribute feature and the graph…

Computer Vision and Pattern Recognition · Computer Science 2021-08-13 Zhihao Peng , Hui Liu , Yuheng Jia , Junhui Hou

Graph data widely exists in real life, with large amounts of data and complex structures. It is necessary to map graph data to low-dimensional embedding. Graph classification, a critical graph task, mainly relies on identifying the…

Machine Learning · Computer Science 2023-10-26 Yuan Li , Li Liu , Penggang Chen , Youmin Zhang , Guoyin Wang