Related papers: Recovery of cyclic words by their subwords
A reconstruction problem of words from scattered factors asks for the minimal information, like multisets of scattered factors of a given length or the number of occurrences of scattered factors from a given set, necessary to uniquely…
We study word reconstruction problems. Improving a previous result by P. Fleischmann, M. Lejeune, F. Manea, D. Nowotka and M. Rigo, we prove that, for any unknown word $w$ of length $n$ over an alphabet of cardinality $k$, $w$ can be…
We study decompositions of words into subwords that are in some sense similar, which means that one subword may be obtained from the other by a relatively simple transformation. Our main inspiration are shuffle squares, an intriguing class…
We investigate the scattered palindromic subwords in a finite word. We start by characterizing the words with the least number of scattered palindromic subwords. Then, we give an upper bound for the total number of palindromic subwords in a…
Cyclic words are equivalence classes of cyclic permutations of ordinary words. When a group is given by a rewriting relation, a rewriting system on cyclic words is induced, which is used to construct algorithms to find minimal length…
Motivated by studies of data retrieval in polymer-based storage systems, we consider the problem of reconstructing a multiset of binary strings that have the same length and the same weight from the compositions of their prefixes and…
We consider the number of occurrences of subwords (non-consecutive sub-sequences) in a given word. We first define the notion of subword entropy of a given word that measures the maximal number of occurrences among all possible subwords. We…
For a word $S$, let $f(S)$ be the largest integer $m$ such that there are two disjoints identical (scattered) subwords of length $m$. Let $f(n, \Sigma) = \min \{f(S): S \text{is of length} n, \text{over alphabet} \Sigma \}$. Here, it is…
Special scattered subwords, in which the gaps are of length from a given set, are defined. The scattered subword complexity, which is the number of such scattered subwords, is computed for rainbow words.
Motivated by mass-spectrometry protein sequencing, we consider a simply-stated problem of reconstructing a string from the multiset of its substring compositions. We show that all strings of length 7, one less than a prime, or one less than…
Partial words are sequences over a finite alphabet that may contain wildcard symbols, called holes, which match or are compatible with all letters; partial words without holes are said to be full words (or simply words). Given an infinite…
The word inference problem is to determine languages such that the information on the number of occurrences of those subwords in the language can uniquely identify a word. A considerable amount of work has been done on this problem, but the…
A universal partial cycle (or upcycle) for $\mathcal{A}^n$ is a cyclic sequence that covers each word of length $n$ over the alphabet $\mathcal{A}$ exactly once -- like a De Bruijn cycle, except that we also allow a wildcard symbol…
A binary shuffle square is a binary word of even length that can be partitioned into two disjoint, identical subwords. Huang, Nam, Thaper, and the first author conjectured that as $n\rightarrow \infty$, asymptotically half of all binary…
A double occurrence word $w$ over a finite alphabet $\Sigma$ is a word in which each alphabet letter appears exactly twice. Such words arise naturally in the study of topology, graph theory, and combinatorics. Recently, double occurrence…
We consider the problem of binary string reconstruction from the multiset of its substring compositions, i.e., referred to as the substring composition multiset, first introduced and studied by Acharya et al. We introduce a new algorithm…
The number of zeros and the number of ones in a binary string are referred to as the composition of the string, and the prefix-suffix compositions of a string are a multiset formed by the compositions of the prefixes and suffixes of all…
Ulam words are binary words defined recursively as follows: the length-$1$ Ulam words are $0$ and $1$, and a binary word of length $n$ is Ulam if and only if it is expressible uniquely as a concatenation of two shorter, distinct Ulam words.…
A flip-swap language is a set S of binary strings of length n such that $S \cup 0^n$ is closed under two operations (when applicable): (1) Flip the leftmost 1; and (2) Swap the leftmost 1 with the bit to its right. Flip-swap languages model…
We prove a precise formula for the minimal number K(n) such that every binary word of length $n$ can be divided into K(n) palindromes. Also we estimate the average number $\ol K(n)$ of palindromes composing a random binary word of the…