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Modern deep neural networks have shown remarkable performance in medical image classification. However, such networks either emphasize pixel-intensity features instead of fundamental anatomical structures (e.g., those encoded by topological…

Computer Vision and Pattern Recognition · Computer Science 2025-12-09 Pengfei Gu , Huimin Li , Haoteng Tang , Dongkuan , Xu , Erik Enriquez , DongChul Kim , Bin Fu , Danny Z. Chen

In this work we use the persistent homology method, a technique in topological data analysis (TDA), to extract essential topological features from the data space and combine them with deep learning features for classification tasks. In TDA,…

Computer Vision and Pattern Recognition · Computer Science 2023-11-14 Mariana Dória Prata Lima , Gilson Antonio Giraldi , Gastão Florêncio Miranda Junior

Morphological methods play a crucial role in remote sensing image processing, due to their ability to capture and preserve small structural details. However, most of the existing deep learning models for semantic segmentation are based on…

Computer Vision and Pattern Recognition · Computer Science 2025-03-11 Jun Xie , Wenxiao Li , Faqiang Wang , Liqiang Zhang , Zhengyang Hou , Jun Liu

Segmentation of biomedical images is essential for studying and characterizing anatomical structures, detection and evaluation of pathological tissues. Segmentation has been further shown to enhance the reconstruction performance in many…

Medical Physics · Physics 2019-01-11 Subhamoy Mandal , Xosé Luís Deán-Ben , Daniel Razansky

Image semantic segmentation aims at the pixel-level classification of images, which has requirements for both accuracy and speed in practical application. Existing semantic segmentation methods mainly rely on the high-resolution input to…

Computer Vision and Pattern Recognition · Computer Science 2022-11-07 Tianjiao Jiang , Yi Jin , Tengfei Liang , Xu Wang , Yidong Li

Accurate segmentation of thin, tubular structures (e.g., blood vessels) is challenging for deep neural networks. These networks classify individual pixels, and even minor misclassifications can break the thin connections within these…

Medical image registration is a fundamental task in medical image analysis, aiming to establish spatial correspondences between paired images. However, existing unsupervised deformable registration methods rely solely on intensity-based…

Computer Vision and Pattern Recognition · Computer Science 2025-02-18 Hao Xu , Tengfei Xue , Jianan Fan , Dongnan Liu , Yuqian Chen , Fan Zhang , Carl-Fredrik Westin , Ron Kikinis , Lauren J. O'Donnell , Weidong Cai

Appropriately representing elements in a database so that queries may be accurately matched is a central task in information retrieval; recently, this has been achieved by embedding the graphical structure of the database into a manifold in…

Machine Learning · Statistics 2023-07-10 Yueqi Cao , Athanasios Vlontzos , Luca Schmidtke , Bernhard Kainz , Anthea Monod

Topological data analysis (TDA) uncovers crucial properties of objects in medical imaging. Methods based on persistent homology have demonstrated their advantages in capturing topological features that traditional deep learning methods…

Computer Vision and Pattern Recognition · Computer Science 2024-08-16 Yanfan Zhu , Yash Singh , Khaled Younis , Shunxing Bao , Yuankai Huo

Dimensionality reduction is an integral part of data visualization. It is a process that obtains a structure preserving low-dimensional representation of the high-dimensional data. Two common criteria can be used to achieve a dimensionality…

Computational Geometry · Computer Science 2018-06-25 Lin Yan , Yaodong Zhao , Paul Rosen , Carlos Scheidegger , Bei Wang

Convolutional autoencoders have emerged as popular methods for unsupervised defect segmentation on image data. Most commonly, this task is performed by thresholding a pixel-wise reconstruction error based on an $\ell^p$ distance. This…

Computer Vision and Pattern Recognition · Computer Science 2019-04-09 Paul Bergmann , Sindy Löwe , Michael Fauser , David Sattlegger , Carsten Steger

In many biomedical segmentation tasks, the preservation of elongated structure continuity and length is more important than voxel-wise accuracy. We propose two novel loss functions, Negative Centerline Loss and Simplified Topology Loss,…

Computer Vision and Pattern Recognition · Computer Science 2025-09-04 Karol Szustakowski , Luk Frank , Julia Esser , Jan Gründemann , Marie Piraud

Mapping is crucial for spatial reasoning, planning and robot navigation. Existing approaches range from metric, which require precise geometry-based optimization, to purely topological, where image-as-node based graphs lack explicit…

Robotics · Computer Science 2024-05-10 Sourav Garg , Krishan Rana , Mehdi Hosseinzadeh , Lachlan Mares , Niko Sünderhauf , Feras Dayoub , Ian Reid

Semantic image segmentation, the process of classifying each pixel in an image into a particular class, plays an important role in many visual understanding systems. As the predominant criterion for evaluating the performance of statistical…

Computer Vision and Pattern Recognition · Computer Science 2023-12-12 Reza Azad , Moein Heidary , Kadir Yilmaz , Michael Hüttemann , Sanaz Karimijafarbigloo , Yuli Wu , Anke Schmeink , Dorit Merhof

This paper proposes a novel topological learning framework that integrates networks of different sizes and topology through persistent homology. Such challenging task is made possible through the introduction of a computationally efficient…

Neurons and Cognition · Quantitative Biology 2023-01-30 Tananun Songdechakraiwut , Moo K. Chung

Graph pattern matching is often defined in terms of subgraph isomorphism, an NP-complete problem. To lower its complexity, various extensions of graph simulation have been considered instead. These extensions allow pattern matching to be…

Databases · Computer Science 2012-01-04 Shuai Ma , Yang Cao , Wenfei Fan , Jinpeng Huai , Tianyu Wo

A topology preserving skeleton is a synthetic representation of an object that retains its topology and many of its significant morphological properties. The process of obtaining the skeleton, referred to as skeletonization or thinning, is…

Computer Vision and Pattern Recognition · Computer Science 2015-06-17 Paweł Dłotko , Ruben Specogna

Delineation of curvilinear structures is an important problem in Computer Vision with multiple practical applications. With the advent of Deep Learning, many current approaches on automatic delineation have focused on finding more powerful…

Computer Vision and Pattern Recognition · Computer Science 2017-12-07 Agata Mosinska , Pablo Marquez-Neila , Mateusz Kozinski , Pascal Fua

Introducing explicit constraints on the structural predictions has been an effective way to improve the performance of semantic segmentation models. Existing methods are mainly based on insufficient hand-crafted rules that only partially…

Computer Vision and Pattern Recognition · Computer Science 2019-07-30 Boxi Wu , Shuai Zhao , Wenqing Chu , Zheng Yang , Deng Cai

The stability of mine dumps is contingent upon the precise arrangement of spoil piles, taking into account their geological and geotechnical attributes. Yet, on-site characterisation of individual piles poses a formidable challenge. The…

Computer Vision and Pattern Recognition · Computer Science 2025-05-21 Sureka Thiruchittampalam , Bikram P. Banerjee , Nancy F. Glenn , Simit Raval