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Simulating spontaneous structural rearrangements in macromolecules with classical Molecular Dynamics (MD) is an outstanding challenge. Conventional supercomputers can access time intervals up to tens of $\mu$s, while many key events occur…

Biological Physics · Physics 2026-03-19 Danial Ghamari , Roberto Covino , Pietro Faccioli

We investigate the interpolation of power spectra of matter fluctuations using Artificial Neural Network (PkANN). We present a new approach to confront small-scale non-linearities in the power spectrum of matter fluctuations. This…

Cosmology and Nongalactic Astrophysics · Physics 2012-09-27 Shankar Agarwal , Filipe B. Abdalla , Hume A. Feldman , Ofer Lahav , Shaun A. Thomas

Technological advances have enabled the generation of unique and complementary types of data or views (e.g. genomics, proteomics, metabolomics) and opened up a new era in multiview learning research with the potential to lead to new…

Machine Learning · Computer Science 2024-02-19 Hengkang Wang , Han Lu , Ju Sun , Sandra E Safo

Despite a lack of theoretical understanding, deep neural networks have achieved unparalleled performance in a wide range of applications. On the other hand, shallow representation learning with component analysis is associated with rich…

Machine Learning · Computer Science 2018-03-20 Calvin Murdock , Ming-Fang Chang , Simon Lucey

Circuits of biological neurons, such as in the functional parts of the brain can be modeled as networks of coupled oscillators. Inspired by the ability of these systems to express a rich set of outputs while keeping (gradients of) state…

Machine Learning · Computer Science 2021-03-16 T. Konstantin Rusch , Siddhartha Mishra

An approach to incorporate deep learning within an iterative image reconstruction framework to reconstruct images from severely incomplete measurement data is presented. Specifically, we utilize a convolutional neural network (CNN) as a…

Computer Vision and Pattern Recognition · Computer Science 2017-09-05 Brendan Kelly , Thomas P. Matthews , Mark A. Anastasio

Biological networks provide insight into the complex organization of biological processes in a cell at the system level. They are an effective tool for understanding the comprehensive map of functional interactions, finding the functional…

Molecular Networks · Quantitative Biology 2017-09-14 Somaye Hashemifar

Sequential learning of multiple tasks in artificial neural networks using gradient descent leads to catastrophic forgetting, whereby previously learned knowledge is erased during learning of new, disjoint knowledge. Here, we propose a…

Machine Learning · Computer Science 2019-06-26 Shixian Wen , Laurent Itti

Animals and insects showcase remarkably robust and adept navigational abilities, up to literally circumnavigating the globe. Primary progress in robotics inspired by these natural systems has occurred in two areas: highly theoretical…

Robotics · Computer Science 2023-08-02 Therese Joseph , Tobias Fischer , Michael Milford

This paper presents a novel approach to advancing artificial intelligence (AI) through the development of the Complex Recurrent Spectral Network ($\mathbb{C}$-RSN), an innovative variant of the Recurrent Spectral Network (RSN) model. The…

Machine Learning · Computer Science 2023-12-13 Lorenzo Chicchi , Lorenzo Giambagli , Lorenzo Buffoni , Raffaele Marino , Duccio Fanelli

In the realm of machine learning, the study of anomaly detection and localization within image data has gained substantial traction, particularly for practical applications such as industrial defect detection. While the majority of existing…

Computer Vision and Pattern Recognition · Computer Science 2023-05-02 Wenping Jin , Fei Guo , Li Zhu

A key challenge in complex visuomotor control is learning abstract representations that are effective for specifying goals, planning, and generalization. To this end, we introduce universal planning networks (UPN). UPNs embed differentiable…

Machine Learning · Computer Science 2018-04-05 Aravind Srinivas , Allan Jabri , Pieter Abbeel , Sergey Levine , Chelsea Finn

Artificial intelligence methods including deep neural networks (DNN) can provide rapid molecular classification of tumors from routine histology with accuracy that matches or exceeds human pathologists. Discerning how neural networks make…

Despite significant medical advancements, cancer remains the second leading cause of death, with over 600,000 deaths per year in the US. One emerging field, pathway analysis, is promising but still relies on manually derived wet lab data,…

Machine Learning · Computer Science 2025-09-17 Rishab Parthasarathy , Achintya Bhowmik

Deep unfolding network (DUN) that unfolds the optimization algorithm into a deep neural network has achieved great success in compressive sensing (CS) due to its good interpretability and high performance. Each stage in DUN corresponds to…

Computer Vision and Pattern Recognition · Computer Science 2024-02-20 Jiechong Song , Bin Chen , Jian Zhang

Molecular Dynamics (MD) simulations are fundamental computational tools for the study of proteins and their free energy landscapes. However, sampling protein conformational changes through MD simulations is challenging due to the relatively…

Biomolecules · Quantitative Biology 2023-07-20 Diego E. Kleiman , Hassan Nadeem , Diwakar Shukla

Convolutional neural networks (CNNs) have demonstrated their superiority in numerous computer vision tasks, yet their computational cost results prohibitive for many real-time applications such as pedestrian detection which is usually…

Computer Vision and Pattern Recognition · Computer Science 2018-01-03 Farzin Ghorban , Javier Marín , Yu Su , Alessandro Colombo , Anton Kummert

Neural networks have become an increasingly popular tool for solving many real-world problems. They are a general framework for differentiable optimization which includes many other machine learning approaches as special cases. In this…

Machine Learning · Computer Science 2019-07-22 Bruno Gavranović

Predictive coding (PDC) has recently attracted attention in the neuroscience and computing community as a candidate unifying paradigm for neuronal studies and artificial neural network implementations particularly targeted at unsupervised…

Artificial Intelligence · Computer Science 2017-01-04 Emmanuel Ndidi Osegi , Vincent Ike Anireh

This paper has proposed a new baseline deep learning model of more benefits for image classification. Different from the convolutional neural network(CNN) practice where filters are trained by back propagation to represent different…

Computer Vision and Pattern Recognition · Computer Science 2021-08-13 Yifei Li , Kuangyan Song , Yiming Sun , Liao Zhu