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We consider the problem of interpretable network representation learning for samples of network-valued data. We propose the Principal Component Analysis for Networks (PCAN) algorithm to identify statistically meaningful low-dimensional…

Machine Learning · Statistics 2021-06-29 James D. Wilson , Jihui Lee

The brain's Path Integration (PI) mechanism offers substantial guidance and inspiration for Brain-Inspired Navigation (BIN). However, the PI capability constructed by the Continuous Attractor Neural Networks (CANNs) in most existing BIN…

Machine Learning · Computer Science 2026-04-13 Zhangyu Ge , Xu He , Lingfei Mo , Xiaolin Meng , Wenxuan Yin , Youdong Zhang , Lansong Jiang , Fengyuan Liu

The study of rare events is one of the major challenges in atomistic simulations, and several enhanced sampling methods towards its solution have been proposed. Recently, it has been suggested that the use of the committor, which provides a…

Computational Physics · Physics 2025-10-23 Peilin Kang , Jintu Zhang , Enrico Trizio , TingJun Hou , Michele Parrinello

Autonomous driving technology is progressing rapidly, largely due to complex End To End systems based on deep neural networks. While these systems are effective, their complexity can make it difficult to understand their behavior, raising…

Robotics · Computer Science 2024-12-24 Iqra Aslam , Igor Anpilogov , Andreas Rausch

Many important phenomena in biochemistry and biology exploit dynamical features such as multi-stability, oscillations, and chaos. Construction of novel chemical systems with such rich dynamics is a challenging problem central to the fields…

Molecular Networks · Quantitative Biology 2026-05-04 Alexander Dack , Benjamin Qureshi , Thomas E. Ouldridge , Tomislav Plesa

Exascale computing holds great opportunities for molecular dynamics (MD) simulations. However, to take full advantage of the new possibilities, we must learn how to focus computational power on the discovery of complex molecular mechanisms,…

Chemical Physics · Physics 2019-01-16 Hendrik Jung , Roberto Covino , Gerhard Hummer

Purpose: Bayesian calibration is theoretically superior to standard direct-search algorithm because it can reveal the full joint posterior distribution of the calibrated parameters. However, to date, Bayesian calibration has not been used…

Methodology · Statistics 2020-10-27 Hawre Jalal , Fernando Alarid-Escudero

We propose improvements to the Artificial Neural Network (ANN) method of determining electron scattering cross-sections from swarm data proposed by coauthors. A limitation inherent to this problem, known as the inverse swarm problem, is the…

Computational Physics · Physics 2023-11-23 Dale L Muccignat , Gregory G Boyle , Nathan A Garland , Peter W Stokes , Ronald D White

The concept of conditional computation for deep nets has been proposed previously to improve model performance by selectively using only parts of the model conditioned on the sample it is processing. In this paper, we investigate…

Computer Vision and Pattern Recognition · Computer Science 2019-04-02 Zhourong Chen , Yang Li , Samy Bengio , Si Si

Linear optical architectures have been extensively investigated for quantum computing and quantum machine learning applications. Recently, proposals for photonic quantum machine learning have combined linear optics with resource adaptivity,…

Improving the efficiency of current neural networks and modeling them in biological neural systems have become popular research directions in recent years. Pulse-coupled neural network (PCNN) is a well applicated model for imitating the…

Computer Vision and Pattern Recognition · Computer Science 2026-01-01 Haoran Liu , Mingzhe Liu , Peng Li , Jiahui Wu , Xin Jiang , Zhuo Zuo , Bingqi Liu

Micro-Action Recognition (MAR) has gained increasing attention due to its crucial role as a form of non-verbal communication in social interactions, with promising potential for applications in human communication and emotion analysis.…

Computer Vision and Pattern Recognition · Computer Science 2025-04-16 Kun Li , Dan Guo , Guoliang Chen , Chunxiao Fan , Jingyuan Xu , Zhiliang Wu , Hehe Fan , Meng Wang

Deep convolutional neural networks (CNNs) have shown excellent performance in object recognition tasks and dense classification problems such as semantic segmentation. However, training deep neural networks on large and sparse datasets is…

Computer Vision and Pattern Recognition · Computer Science 2017-12-25 Lorenz Berger , Eoin Hyde , M. Jorge Cardoso , Sebastien Ourselin

In the present article, we propose a paradigm shift on evolving Artificial Neural Networks (ANNs) towards a new bio-inspired design that is grounded on the structural properties, interactions, and dynamics of protein networks (PNs): the…

Neural and Evolutionary Computing · Computer Science 2024-06-10 Oscar Lao , Konstantinos Zacharopoulos , Apostolos Fournaris , Rossano Schifanella , Ioannis Arapakis

Molecular Dynamics simulations are essential tools for understanding the dynamic behavior of biomolecules, yet extracting meaningful molecular pathways from these simulations remains challenging due to the vast amount of generated data. In…

Chemical Physics · Physics 2025-01-07 Luca Donati , Surahit Chewle , Dominik St. Pierre , Vijay Natarajan , Marcus Weber

We propose an adaptive sampling method for the training of Physics Informed Neural Networks (PINNs) which allows for sampling based on an arbitrary problem-specific heuristic which may depend on the network and its gradients. In particular…

Numerical Analysis · Mathematics 2026-04-08 Kevin Buck , Woojeong Kim

The classification of states of matter and their corresponding phase transitions is a special kind of machine-learning task, where physical data allow for the analysis of new algorithms, which have not been considered in the general…

Strongly Correlated Electrons · Physics 2018-04-30 Ye-Hua Liu , Evert P. L. van Nieuwenburg

In the last few years, quantum computing and machine learning fostered rapid developments in their respective areas of application, introducing new perspectives on how information processing systems can be realized and programmed. The…

The splendid success of convolutional neural networks (CNNs) in computer vision is largely attributable to the availability of massive annotated datasets, such as ImageNet and Places. However, in medical imaging, it is challenging to create…

Machine Learning · Computer Science 2021-04-13 Zongwei Zhou , Jae Y. Shin , Suryakanth R. Gurudu , Michael B. Gotway , Jianming Liang

Understanding dynamics in complex systems is challenging because there are many degrees of freedom, and those that are most important for describing events of interest are often not obvious. The leading eigenfunctions of the transition…

Computational Physics · Physics 2023-07-24 John Strahan , Spencer C. Guo , Chatipat Lorpaiboon , Aaron R. Dinner , Jonathan Weare