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Recognizing the successes of treed Gaussian process (TGP) models as an interpretable and thrifty model for nonparametric regression, we seek to extend the model to classification. Both treed models and Gaussian processes (GPs) have,…
In this paper we present geometric features of group based models. We focus on the 3-Kimura model. We present a precise geometric description of the variety associated to any tree on a Zariski open set. In particular this set contains all…
Extending work of Bielawski-Dancer and Konno, we develop a theory of toric hyperkahler varieties, which involves toric geometry, matroid theory and convex polyhedra. The framework is a detailed study of semi-projective toric varieties,…
We give a combinatorial description of the toric ideal of invariants of the Cavender-Farris-Neyman model with a molecular clock (CFN-MC) on a rooted binary phylogenetic tree and prove results about the polytope associated to this toric…
We study a configuration model on bipartite planar maps in which, given $n$ even integers, one samples a planar map with $n$ faces uniformly at random with these face degrees. We prove that when suitably rescaled, such maps always admit…
We study the topology of toric maps. We show that if $f\colon X\to Y$ is a proper toric morphism, with $X$ simplicial, then the cohomology of every fiber of $f$ is pure and of Hodge-Tate type. When the map is a fibration, we give an…
In combinatorial commutative algebra and algebraic statistics many toric ideals are constructed from graphs. Keeping the categorical structure of graphs in mind we give previous results a more functorial context and generalize them by…
Toral automorphisms, represented by unimodular integer matrices, are investigated with respect to their symmetries and reversing symmetries. We characterize the symmetry groups of GL(n,Z) matrices with simple spectrum through their…
Let $G$ be a simple graph on the vertex set $\{1,\ldots,n\}$ with $m$ edges. An algebraic object attached to $G$ is the ideal $P_{G}$ generated by diagonal 2-minors of an $n \times n$ matrix of variables. In this paper we prove that if $G$…
We prove that the Tutte embeddings (a.k.a. harmonic/barycentric embeddings) of certain random planar maps converge to $\gamma$-Liouville quantum gravity ($\gamma$-LQG). Specifically, we treat mated-CRT maps, which are discretized matings of…
Tropical algebraic geometry offers new tools for elimination theory and implicitization. We determine the tropicalization of the image of a subvariety of an algebraic torus under any homomorphism from that torus to another torus.
A classical set of birational invariants of a variety are its spaces of pluricanonical forms and some of their canonically defined subspaces. Each of these vector spaces admits a typical metric structure which is also birationally…
A staged tree model is a discrete statistical model encoding relationships between events. These models are realised by directed trees with coloured vertices. In algebro-geometric terms, the model consists of points inside a toric variety.…
Lemaitre-Tolman-Bondi (LTB) solutions are used frequently to describe the collapse or expansion of spherically symmetric inhomogeneous mass distributions in the Universe. These exact solutions are obtained in the synchronous gauge where…
We investigate the tree gonality of a genus-$g$ metric graph, defined as the minimum degree of a tropical morphism from any tropical modification of the metric graph to a metric tree. We give a combinatorial constructive proof that this…
Let X be a smooth complex projective variety of dimension n equipped with a very ample Hermitian line bundle L. In the first part of the paper, we show that if there exists a toric degeneration of X satisfying some natural hypotheses (which…
In a traditional Gaussian graphical model, data homogeneity is routinely assumed with no extra variables affecting the conditional independence. In modern genomic datasets, there is an abundance of auxiliary information, which often gets…
Given a finite, simple, vertex-weighted graph, we construct a graded associative (non-commutative) algebra, whose generators correspond to vertices and whose ideal of relations has generators that are graded commutators corresponding to…
We show that various actions of topological conformal theories that were suggested recentely are particular cases of a general action. We prove the invariance of these models under transformations generated by nilpotent fermionic generators…
To any toric ideal $I_A$, encoded by an integer matrix $A$, we associate a matroid structure called {\em the bouquet graph} of $A$ and introduce another toric ideal called {\em the bouquet ideal} of $A$. We show how these objects capture…