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The broad abundance of time series data, which is in sharp contrast to limited knowledge of the underlying network dynamic processes that produce such observations, calls for a rigorous and efficient method of causal network inference. Here…

Information Theory · Computer Science 2015-05-19 Jie Sun , Dane Taylor , Erik M. Bollt

Information flow provides a natural measure for the causal interaction between dynamical events. This study extends our previous rigorous formalism of componentwise information flow to the bulk information flow between two complex…

Neurons and Cognition · Quantitative Biology 2021-12-30 X. San Liang

The correlations that can be observed between a set of variables depend on the causal structure underpinning them. Causal structures can be modeled using directed acyclic graphs, where nodes represent variables and edges denote functional…

Quantum Physics · Physics 2015-01-08 Rafael Chaves , Christian Majenz , David Gross

In this study, we address causal inference when only observational data and a valid causal ordering from the causal graph are available. We introduce a set of flow models that can recover component-wise, invertible transformation of…

Machine Learning · Computer Science 2024-12-16 Minh Khoa Le , Kien Do , Truyen Tran

Many complex biological, social, and economical networks show topologies drastically differing from random graphs. But, what is a complex network, i.e.\ how can one quantify the complexity of a graph? Here the Offdiagonal Complexity (OdC),…

Quantitative Methods · Quantitative Biology 2007-12-28 Jens Christian Claussen

We present two algorithms for exact and approximate inference in causal networks. The first algorithm, dynamic conditioning, is a refinement of cutset conditioning that has linear complexity on some networks for which cutset conditioning is…

Artificial Intelligence · Computer Science 2013-02-21 Adnan Darwiche

The algorithmic Markov condition states that the most likely causal direction between two random variables X and Y can be identified as that direction with the lowest Kolmogorov complexity. Due to the halting problem, however, this notion…

Machine Learning · Computer Science 2017-02-23 Kailash Budhathoki , Jilles Vreeken

Most neural models of causality assume static causal graphs, failing to capture the dynamic and sparse nature of physical interactions where causal relationships emerge and dissolve over time. We introduce the Causal Process Framework and…

Machine Learning · Computer Science 2026-04-07 Turan Orujlu , Christian Gumbsch , Martin V. Butz , Charley M Wu

With the increasing availability and size of multi-omics datasets, investigating the casual relationships between molecular phenotypes has become an important aspect of exploring underlying biology and genetics. This paper aims to introduce…

Molecular Networks · Quantitative Biology 2022-01-31 Jack Kelly , Carlo Berzuini , Bernard Keavney , Maciej Tomaszewski , Hui Guo

Many real-world networks exhibit degree-degree correlations between nodes separated by more than one step. Such long-range degree correlations (LRDCs) can be fully described by one joint and four conditional probability distributions with…

Physics and Society · Physics 2020-03-25 Yuka Fujiki , Kousuke Yakubo

In order to extract correlation information inherited in stochastic time series, the visibility graph algorithm has been recently proposed, by which a time series can be mapped onto a complex network. We demonstrate that the visibility…

Data Analysis, Statistics and Probability · Physics 2016-05-24 Pouya Manshour

Optical orthogonal codes (OOCs) are sets of $(0,1)$-sequences with good auto- and cross-correlation properties. They were originally introduced for use in multi-access communication, particularly in the setting of optical CDMA…

Combinatorics · Mathematics 2025-01-15 Sophie Huczynska , Siaw-Lynn Ng

The problem of inferring the direct causal parents of a response variable among a large set of explanatory variables is of high practical importance in many disciplines. However, established approaches often scale at least exponentially…

Machine Learning · Statistics 2022-09-20 Ashkan Soleymani , Anant Raj , Stefan Bauer , Bernhard Schölkopf , Michel Besserve

In this work, we discover that causal inference provides a promising approach to capture heterophilic message-passing in Graph Neural Network (GNN). By leveraging cause-effect analysis, we can discern heterophilic edges based on asymmetric…

Machine Learning · Computer Science 2024-11-28 Botao Wang , Jia Li , Heng Chang , Keli Zhang , Fugee Tsung

Graphical models can represent a multivariate distribution in a convenient and accessible form as a graph. Causal models can be viewed as a special class of graphical models that not only represent the distribution of the observed system…

Methodology · Statistics 2017-06-29 Christina Heinze-Deml , Marloes H. Maathuis , Nicolai Meinshausen

Reconstructing the causal relationships behind the phenomena we observe is a fundamental challenge in all areas of science. Discovering causal relationships through experiments is often infeasible, unethical, or expensive in complex…

Machine Learning · Statistics 2022-09-09 Christian Reiser

Anti-discrimination is an increasingly important task in data science. In this paper, we investigate the problem of discovering both direct and indirect discrimination from the historical data, and removing the discriminatory effects before…

Machine Learning · Computer Science 2016-11-23 Lu Zhang , Yongkai Wu , Xintao Wu

Complex networked systems can be modeled and represented as graphs, with nodes representing the agents and the links describing the dynamic coupling between them. The fundamental objective of network identification for dynamic systems is to…

Systems and Control · Electrical Eng. & Systems 2020-06-09 Venkat Ram Subramanian , Andrew Lamperski , Murti V. Salapaka

Recent years have seen rapid progress at the intersection between causality and machine learning. Motivated by scientific applications involving high-dimensional data, in particular in biomedicine, we propose a deep neural architecture for…

Machine Learning · Computer Science 2022-12-12 Kai Lagemann , Christian Lagemann , Bernd Taschler , Sach Mukherjee

We consider the problem of learning causal information between random variables in directed acyclic graphs (DAGs) when allowing arbitrarily many latent and selection variables. The FCI (Fast Causal Inference) algorithm has been explicitly…

Methodology · Statistics 2012-05-30 Diego Colombo , Marloes H. Maathuis , Markus Kalisch , Thomas S. Richardson