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In the recent years, systems using FPGAs, GPUs have increased due to their advantages such as power efficiency compared to CPUs. However, use in systems such as FPGAs and GPUs requires understanding hardware-specific technical…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-11 Yoji Yamato

High-throughput structure-based screening of drug-like molecules has become a common tool in biomedical research. Recently, acceleration with graphics processing units (GPUs) has provided a large performance boost for molecular docking…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-07 Mathialakan Thavappiragasam , Wael Elwasif , Ada Sedova

One of the barriers to the adoption of parallel computing is the inherent complexity of its programming. The Open Multi-Processing (OpenMP) Application Programming Interface (API) facilitates such implementations, providing high abstraction…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-07-21 Reinaldo Agostinho de Souza Filho , Diego V. Cirilo do Nascimento , Samuel Xavier-de-Souza

It is demonstrated how the non-proprietary OpenACC standard of compiler directives may be used to compactly and efficiently accelerate the rate-determining steps of two of the most routinely applied many-body methods of electronic structure…

Chemical Physics · Physics 2017-09-15 Janus Juul Eriksen

AMD Instinct$^\text{TM}$ MI300A is the world's first data center accelerated processing unit (APU) with memory shared between the AMD "Zen 4" EPYC$^\text{TM}$ cores and third generation CDNA$^\text{TM}$ compute units. A single memory space…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-02 Suyash Tandon , Leopold Grinberg , Gheorghe-Teodor Bercea , Carlo Bertolli , Mark Olesen , Simone Bnà , Nicholas Malaya

With the slowing of Moore's Law, heterogeneous computing platforms such as Field Programmable Gate Arrays (FPGAs) have gained increasing interest for accelerating HPC workloads. In this work we present, to the best of our knowledge, the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-13 Gabriel Rodriguez-Canal , David Katz , Nick Brown

GPU runtimes are historically implemented in CUDA or other vendor specific languages dedicated to GPU programming. In this work we show that OpenMP 5.1, with minor compiler extensions, is capable of replacing existing solutions without a…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-10-06 Shilei Tian , Jon Chesterfield , Johannes Doerfert , Barbara Chapman

Asymmetric multicore processors (AMPs) couple high-performance big cores and low-power small cores with the same instruction-set architecture but different features, such as clock frequency or microarchitecture. Previous work has shown that…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-13 Juan Carlos Saez , Fernando Castro , Manuel Prieto-Matias

Advances in GPU compute throughput and memory capacity brings significant opportunities to a wide range of workloads. However, efficiently utilizing these resources remains challenging, particularly because diverse application…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-04-10 Gabin Schieffer , Ruimin Shi , Jie Ren , Ivy Peng

Recently, there has been growing interest in using standard language constructs (e.g. C++'s Parallel Algorithms and Fortran's do concurrent) for accelerated computing as an alternative to directive-based APIs (e.g. OpenMP and OpenACC).…

Mathematical Software · Computer Science 2021-10-22 Miko M. Stulajter , Ronald M. Caplan , Jon A. Linker

In recent years, utilization of heterogeneous hardware other than small core CPU such as GPU, FPGA or many core CPU is increasing. However, when using heterogeneous hardware, barriers of technical skills such as OpenMP, CUDA and OpenCL are…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-24 Yoji Yamato

One of the key requirements for the Lattice QCD Application Development as part of the US Exascale Computing Project is performance portability across multiple architectures. Using the Grid C++ expression template as a starting point, we…

High Energy Physics - Lattice · Physics 2018-04-18 Peter A. Boyle , M. A. Clark , Carleton DeTar , Meifeng Lin , Verinder Rana , Alejandro Vaquero Avilés-Casco

Since the first idea of using GPU to general purpose computing, things have evolved over the years and now there are several approaches to GPU programming. GPU computing practically began with the introduction of CUDA (Compute Unified…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-09 Bogdan Oancea , Tudorel Andrei , Raluca Mariana Dragoescu

OpenCL, along with CUDA, is one of the main tools used to program GPGPUs. However, it allows running the same code on multi-core CPUs too, making it a rival for the long-established OpenMP. In this paper we compare OpenCL and OpenMP when…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-03-24 Kamran Karimi

Utilizing GPUs is critical for high performance on heterogeneous systems. However, leveraging the full potential of GPUs for accelerating legacy CPU applications can be a challenging task for developers. The porting process requires…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-27 Shilei Tian , Tom Scogland , Barbara Chapman , Johannes Doerfert

Fine-tuning large language models (LLMs) often exceeds GPU memory limits, prompting systems to offload model states to CPU memory. However, existing offloaded training frameworks like ZeRO-Offload treat all parameters equally and update the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-08-06 Tingfeng Lan , Yusen Wu , Bin Ma , Zhaoyuan Su , Rui Yang , Tekin Bicer , Masahiro Tanaka , Olatunji Ruwase , Dong Li , Yue Cheng

Choosing an appropriate programming paradigm for high-performance computing on low-power devices can be useful to speed up calculations. Many Android devices have an integrated GPU and - although not officially supported - the OpenCL…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-10 Robert Fritze , Claudia Plant

OpenMP is the de-facto standard for shared memory systems in High-Performance Computing (HPC). It includes a task-based model that offers a high-level of abstraction to effectively exploit highly dynamic structured and unstructured…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-12-12 Chenle Yu , Sara Royuela , Eduardo Quiñones

GPU-based HPC clusters are attracting more scientific application developers due to their extensive parallelism and energy efficiency. In order to achieve portability among a variety of multi/many core architectures, a popular choice for an…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-04-10 Ali TehraniJamsaz , Alok Mishra , Akash Dutta , Abid M. Malik , Barbara Chapman , Ali Jannesari

We present preliminary results of a GPU porting of all main Gadget3 modules (gravity computation, SPH density computation, SPH hydrodynamic force, and thermal conduction) using OpenACC directives. Here we assign one GPU to each MPI rank and…

Instrumentation and Methods for Astrophysics · Physics 2020-03-25 Antonio Ragagnin , Klaus Dolag , Mathias Wagner , Claudio Gheller , Conradin Roffler , David Goz , David Hubber , Alexander Arth