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We discuss the dynamics of a Bose-Einstein condensate in a double-well trap subject to phase noise and particle loss. The phase coherence of a weakly-interacting condensate, experimentally measured via the contrast in an interference…

Quantum Physics · Physics 2009-03-25 D. Witthaut , F. Trimborn , S. Wimberger

We study within the spin-boson dynamics the synchronization of quantum tunneling with an external periodic driving signal. As a main result we find that at a sufficiently large system-bath coupling strength (Kondo parameter a>1) the thermal…

Statistical Mechanics · Physics 2007-06-13 Igor Goychuk , Jesus Casado-Pascual , Manuel Morillo , Joerg Lehmann , Peter Hanggi

Likelihood-based inference in stochastic non-linear dynamical systems, such as those found in chemical reaction networks and biological clock systems, is inherently complex and has largely been limited to small and unrealistically simple…

Computation · Statistics 2024-07-08 Ben Swallow , David A. Rand , Giorgos Minas

A stochastic theory for the toppling activity in sandpile models is developed, based on a simple mean-field assumption about the toppling process. The theory describes the process as an anti-persistent Gaussian walk, where the diffusion…

Statistical Finance · Quantitative Finance 2009-11-13 Martin Rypdal , Kristoffer Rypdal

In the past few decades, the development of fluorescent technologies and microscopic techniques has greatly improved scientists' ability to observe real-time single-cell activities. In this paper, we consider the filtering problem associate…

Quantitative Methods · Quantitative Biology 2022-07-27 Zhou Fang , Ankit Gupta , Mustafa Khammash

Stochastic thermodynamics provides a useful set of tools to analyze and constrain the behavior of far from equilibrium systems. In this paper, we report an application of ideas from stochastic thermodynamics to the problem of membrane…

Soft Condensed Matter · Physics 2019-10-25 Michael Nguyen , Suriyanarayanan Vaikuntanathan

In a multitude of life's processes, cilia and flagella are found indispensable. Recently, the biflagellated chlorophyte alga Chlamydomonas has become a model organism for the study of ciliary coordination and synchronization. Here, we use…

Biological Physics · Physics 2014-02-28 Kirsty Y. Wan , Kyriacos C. Leptos , Raymond E. Goldstein

Cellular signaling networks have evolved to cope with intrinsic fluctuations, coming from the small numbers of constituents, and the environmental noise. Stochastic chemical kinetics equations govern the way biochemical networks process…

Quantitative Methods · Quantitative Biology 2009-11-13 Yueheng Lan , Peter G. Wolynes , Garegin A. Papoian

We propose to introduce a new stochastic process in molecular dynamics in order to improve the description of the nucleon emission process from a hot nucleus. We give momentum fluctuations originating from the momentum width of the nucleon…

Nuclear Theory · Physics 2008-11-26 Akira Ono , Hisashi Horiuchi

Conventional digital computation is rapidly approaching physical limits for speed and energy dissipation. Here we fabricate and test a simple neuromorphic circuit that models neuronal somas, axons and synapses with superconducting Josephson…

Neurons and Cognition · Quantitative Biology 2017-03-29 Ken Segall , Matthew LeGro , Steven Kaplan , Oleksiy Svitelskiy , Shreeya Khadka , Patrick Crotty , Daniel Schult

Causal ordering of key events in the cell cycle is essential for proper functioning of an organism. Yet, it remains a mystery how a specific temporal program of events is maintained despite ineluctable stochasticity in the biochemical…

Molecular Networks · Quantitative Biology 2017-03-30 Farshid Jafarpour , Michael Vennettilli , Srividya Iyer-Biswas

Superparamagnetic tunnel junctions are nanostructures that auto-oscillate stochastically under the effect of thermal noise. Recent works showed that despite their stochasticity, such junctions possess a capability to synchronize to…

Mesoscale and Nanoscale Physics · Physics 2016-09-21 A. Mizrahi , N. Locatelli , J. Grollier , D. Querlioz

Turbulent flows frequently accompany physical, chemical and biological processes, such as mixing, two-phase flow, combustion and even foraging by bacteria and plankton larvae, all of which are in principle subject to thermal fluctuations…

Fluid Dynamics · Physics 2021-07-08 Dmytro Bandak , Gregory L. Eyink , Alexei Mailybaev , Nigel Goldenfeld

Owing to the ubiquity of synchronization in the classical world, it is interesting to study its behavior in quantum systems. Though quantum synchronisation has been investigated in many systems, a clear connection to quantum technology…

This thesis is devoted to the theoretical study of slow thermodynamic processes in non-equilibrium stochastic systems. Its main result is a physically and mathematically consistent construction of relevant thermodynamic quantities in the…

Statistical Mechanics · Physics 2014-07-29 Jiří Pešek

The long time dynamics of large particles trapped in two inhomogeneous turbulent shear flows is studied experimentally. Both flows present a common feature, a shear region that separates two colliding circulations, but with different…

Fluid Dynamics · Physics 2016-03-02 N Machicoane , M López-Caballero , L Fiabane , J-F Pinton , M Bourgoin , J Burguete , R Volk

We study the growth of an elongated phase-fluctuating condensate from a non-equilibrium thermal cloud obtained by shock-cooling. We compare the growth of the condensate with numerical simulations, revealing a time delay and a reduction in…

Other Condensed Matter · Physics 2016-08-16 Mathilde Hugbart , Jocelyn A. Retter , Andres Varòn , Philippe Bouyer , Alain Aspect , Matthew J. Davis

Motivated by recent experiments we study the influence of thermal noise on the phase slips in toroidal Bose-Einstein condensates with a rotating weak link. We derive a generalized Arrhenius-like expression for the rate of stochastic phase…

We investigate thermodynamics of general nonequilibrium processes stopped at stochastic times. We propose a systematic strategy for constructing fluctuation-theorem-like martingales for each thermodynamic functional, yielding a family of…

Statistical Mechanics · Physics 2023-06-02 Haoran Yang , Hao Ge

Understanding noisy information engines is a fundamental problem of non-equilibrium physics, particularly in biomolecular systems agitated by thermal and active fluctuations in the cell. By the generalized second law of thermodynamics, the…

Statistical Mechanics · Physics 2020-09-01 Govind Paneru , Sandipan Dutta , Takahiro Sagawa , Tsvi Tlusty , Hyuk Kyu Pak