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Living systems are thermodynamically open but closed in their organization. In other words, even though their material components turn over constantly, a material-independent property persists, which we call organization. Moreover,…

Quantitative Methods · Quantitative Biology 2025-03-07 Pedro Márquez-Zacarías , Andrés Ortiz-Muñoz , Emma P. Bingham

A modeling formalism is proposed for the description and study of living and life-like systems. It provides an abstract conceptual model framework for real life and evolution of biological organisms. It is proposed, that this model…

Populations and Evolution · Quantitative Biology 2013-06-14 Margareta Segerståhl

Self-regulation of living tissue as an example of self-organization phenomena in hierarchical systems of biological, ecological, and social nature is under consideration. The characteristic feature of these systems is the absence of any…

Medical Physics · Physics 2009-11-30 Wassily Lubashevsky , Ihor Lubashevsky , Reinhard Mahnke

Self-organization can be broadly defined as the ability of a system to display ordered spatio-temporal patterns solely as the result of the interactions among the system components. Processes of this kind characterize both living and…

Adaptation and Self-Organizing Systems · Physics 2025-12-22 Carlos Gershenson , Vito Trianni , Justin Werfel , Hiroki Sayama

From flocking birds to schooling fish, organisms interact to form collective dynamics across the natural world. Self-organization is present at smaller scales as well: cells interact and move during development to produce patterns in fish…

Quantitative Methods · Quantitative Biology 2024-07-16 Alexandria Volkening

Both abiotic self-organization and biological mechanisms have been put forward as the origin of a number of geological patterns. It is important to comprehend the formation mechanisms of such structures both to understand geological…

Living systems self-organize in ways that conventional physical frameworks-based on forces, energies, and continuous fields-cannot fully capture. Processes like gene regulation and cellular decision-making involve rule-based logic and…

Other Quantitative Biology · Quantitative Biology 2025-11-18 Hyun Youk

Ecosystems are commonly conceptualized as networks of interacting species. However, partitioning natural diversity of organisms into discrete units is notoriously problematic, and mounting experimental evidence raises the intriguing…

Populations and Evolution · Quantitative Biology 2017-09-22 Mikhail Tikhonov

In a cell or microorganism the processes that generate mass, energy, information transfer, and cell fate specification are seamlessly integrated through a complex network of various cellular constituents and reactions. However, despite the…

Statistical Mechanics · Physics 2009-10-31 H. Jeong , B. Tombor , R. Albert , Z. N. Oltvai , A. -L. Barabasi

A key challenge in modern computing is to develop systems that address complex, dynamic problems in a scalable and efficient way, because the increasing complexity of software makes designing and maintaining efficient and flexible systems…

Other Computer Science · Computer Science 2015-05-19 Gerard Briscoe , Paolo Dini

Measurement in biological systems became a subject of concern as a consequence of numerous reports on limited reproducibility of experimental results. To reveal origins of this inconsistency, we have examined general features of biological…

Other Quantitative Biology · Quantitative Biology 2017-04-03 Dalibor Štys , Jan Urban , Renata Rychtáriková , Anna Zhyrova , Petr Císař

Actual organizations, in particular the ones which operate in evolving and distributed environments, need advanced frameworks for the management of the knowledge life cycle. These systems have to be based on the social relations which…

General Physics · Physics 2010-04-26 Luigi Lella , Ignazio Licata

This paper aims at providing a rigorous definition of self- organization, one of the most desired properties for dynamic systems (e.g., peer-to-peer systems, sensor networks, cooperative robotics, or ad-hoc networks). We characterize…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-11-11 Emmanuelle Anceaume , Xavier Défago , Maria Potop-Butucaru , Matthieu Roy

The idea is advanced that self-organization in complex systems can be treated as decision making (as it is performed by humans) and, vice versa, decision making is nothing but a kind of self-organization in the decision maker nervous…

Adaptation and Self-Organizing Systems · Physics 2014-08-08 V. I. Yukalov , D. Sornette

All intelligence is collective intelligence, in the sense that it is made of parts which must align with respect to system-level goals. Understanding the dynamics which facilitate or limit navigation of problem spaces by aligned parts thus…

Statistical Mechanics · Physics 2026-05-18 Francesco Sacco , Dalton A R Sakthivadivel , Michael Levin

A primary motivation for our research in Digital Ecosystems is the desire to exploit the self-organising properties of biological ecosystems. Ecosystems are thought to be robust, scalable architectures that can automatically solve complex,…

Neural and Evolutionary Computing · Computer Science 2016-11-18 G. Briscoe , S. Sadedin , G. Paperin

Nearly all cell models explicitly or implicitly deal with the biophysical constraints that must be respected for life to persist. Despite this, there is almost no systematicity in how these constraints are implemented, and we lack a…

Cell Behavior · Quantitative Biology 2026-05-20 Connor McShaffrey , Eran Agmon , Randall D. Beer

We do not attempt to provide yet another definition of selforganization, but explore the conditions under which we can model a system as self-organizing. These involve the dynamics of entropy, and the purpose, aspects, and description level…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Carlos Gershenson , Francis Heylighen

Complex networks are universal, arising in fields as disparate as sociology, physics, and biology. In the past decade, extensive research into the properties and behaviors of complex systems has uncovered surprising commonalities among the…

Other Quantitative Biology · Quantitative Biology 2015-06-26 Claire Christensen , Reka Albert

It is proposed that self-organisation (SO) in non-equilibrium systems is governed by a general principle: it emerges when a minute subset of system configurations are exceptionally stable and long-lived to survive the noise generated by the…

Statistical Mechanics · Physics 2026-04-20 Raphael Blumenfeld
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