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Less than 1% of protein sequences are structurally and functionally annotated. Natural Language Processing (NLP) community has recently embraced self-supervised learning as a powerful approach to learn representations from unlabeled text,…

Biomolecules · Quantitative Biology 2020-12-08 Modestas Filipavicius , Matteo Manica , Joris Cadow , Maria Rodriguez Martinez

The multi-head self-attention mechanism of the transformer model has been thoroughly investigated recently. In one vein of study, researchers are interested in understanding why and how transformers work. In another vein, researchers…

Computation and Language · Computer Science 2022-10-28 Raymond Li , Wen Xiao , Linzi Xing , Lanjun Wang , Gabriel Murray , Giuseppe Carenini

Recent approaches in literature have exploited the multi-modal information in documents (text, layout, image) to serve specific downstream document tasks. However, they are limited by their - (i) inability to learn cross-modal…

Computation and Language · Computer Science 2022-01-06 Subhojeet Pramanik , Shashank Mujumdar , Hima Patel

Pre-trained Language Model (PLM) has become a representative foundation model in the natural language processing field. Most PLMs are trained with linguistic-agnostic pre-training tasks on the surface form of the text, such as the masked…

Computation and Language · Computer Science 2022-11-11 Yiming Cui , Wanxiang Che , Shijin Wang , Ting Liu

The key to a Transformer model is the self-attention mechanism, which allows the model to analyze an entire sequence in a computationally efficient manner. Recent work has suggested the possibility that general attention mechanisms used by…

Machine Learning · Computer Science 2020-01-01 Thomas Dowdell , Hongyu Zhang

Transformer is the backbone of modern NLP models. In this paper, we propose RealFormer, a simple and generic technique to create Residual Attention Layer Transformer networks that significantly outperform the canonical Transformer and its…

Machine Learning · Computer Science 2021-09-14 Ruining He , Anirudh Ravula , Bhargav Kanagal , Joshua Ainslie

Learned self-attention functions in state-of-the-art NLP models often correlate with human attention. We investigate whether self-attention in large-scale pre-trained language models is as predictive of human eye fixation patterns during…

Computation and Language · Computer Science 2022-05-23 Stephanie Brandl , Oliver Eberle , Jonas Pilot , Anders Søgaard

Large language models (LLMs) now support extremely long context windows, but the quadratic complexity of vanilla attention results in significantly long Time-to-First-Token (TTFT) latency. Existing approaches to address this complexity…

Computation and Language · Computer Science 2025-09-04 Qianchao Zhu , Jiangfei Duan , Chang Chen , Siran Liu , Guanyu Feng , Xin Lv , Xiao Chuanfu , Dahua Lin , Chao Yang

Efficiently handling long contexts in transformer-based language models with low perplexity is an active area of research. Numerous recent approaches like Linformer, Longformer, Performer, and Structured state space models (SSMs)., have not…

Machine Learning · Computer Science 2025-04-22 Sushant Singh , Ausif Mahmood

A real-world text corpus sometimes comprises not only text documents but also semantic links between them (e.g., academic papers in a bibliographic network are linked by citations and co-authorships). Text documents and semantic connections…

Computation and Language · Computer Science 2023-05-23 Bowen Jin , Wentao Zhang , Yu Zhang , Yu Meng , Xinyang Zhang , Qi Zhu , Jiawei Han

Many machine learning tasks such as multiple instance learning, 3D shape recognition, and few-shot image classification are defined on sets of instances. Since solutions to such problems do not depend on the order of elements of the set,…

Machine Learning · Computer Science 2019-05-28 Juho Lee , Yoonho Lee , Jungtaek Kim , Adam R. Kosiorek , Seungjin Choi , Yee Whye Teh

The transformer structure employed in large language models (LLMs), as a specialized category of deep neural networks (DNNs) featuring attention mechanisms, stands out for their ability to identify and highlight the most relevant aspects of…

Computer Vision and Pattern Recognition · Computer Science 2024-05-03 Matin Mortaheb , Erciyes Karakaya , Mohammad A. Amir Khojastepour , Sennur Ulukus

Although Transformer models such as Google's BERT and OpenAI's GPT-3 are successful in many natural language processing tasks, training and deploying these models are costly and inefficient.Even if pre-trained models are used, deploying…

Machine Learning · Computer Science 2021-01-26 Madhusudan Verma

The success of self-attention lies in its ability to capture long-range dependencies and enhance context understanding, but it is limited by its computational complexity and challenges in handling sequential data with inherent…

Computation and Language · Computer Science 2025-05-05 Md Kowsher , Nusrat Jahan Prottasha , Chun-Nam Yu , Ozlem Ozmen Garibay , Niloofar Yousefi

Attention mechanisms represent a fundamental paradigm shift in neural network architectures, enabling models to selectively focus on relevant portions of input sequences through learned weighting functions. This monograph provides a…

Machine Learning · Computer Science 2026-01-08 Hasi Hays

Recent advances in training large language models (LLMs) using massive amounts of solely textual data lead to strong generalization across many domains and tasks, including document-specific tasks. Opposed to that there is a trend to train…

Computation and Language · Computer Science 2024-02-16 Marcel Lamott , Yves-Noel Weweler , Adrian Ulges , Faisal Shafait , Dirk Krechel , Darko Obradovic

Long-context modeling presents a significant challenge for transformer-based large language models (LLMs) due to the quadratic complexity of the self-attention mechanism and issues with length extrapolation caused by pretraining exclusively…

Computation and Language · Computer Science 2024-05-24 Chenghao Yang , Zi Yang , Nan Hua

The attention mechanism is the computational core of modern Transformer architectures, but its quadratic complexity in the input sequence length is the bottleneck for large-scale inference. This has motivated a rapidly growing body of work…

State-of-the-art results in large language models (LLMs) often rely on scale, which becomes computationally expensive. This has sparked a research agenda to reduce these models' parameter counts and computational costs without significantly…

Computation and Language · Computer Science 2024-11-07 Xiuying Wei , Skander Moalla , Razvan Pascanu , Caglar Gulcehre

Document-level Neural Machine Translation (DocNMT) has been proven crucial for handling discourse phenomena by introducing document-level context information. One of the most important directions is to input the whole document directly to…

Computation and Language · Computer Science 2023-09-26 Zihan Liu , Zewei Sun , Shanbo Cheng , Shujian Huang , Mingxuan Wang