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Background: Identification of the interactions and regulatory relations between biomolecules play pivotal roles in understanding complex biological systems and the mechanisms underlying diverse biological functions. However, the collection…

Computation and Language · Computer Science 2025-04-24 Gilchan Park , Byung-Jun Yoon , Xihaier Luo , Vanessa López-Marrero , Shinjae Yoo , Shantenu Jha

Deep Learning (DL) techniques are increasingly applied in scientific studies across various domains to address complex research questions. However, the methodological details of these DL models are often hidden in the unstructured text. As…

Information Retrieval · Computer Science 2024-11-15 Vamsi Krishna Kommineni , Birgitta König-Ries , Sheeba Samuel

Scientific writing is an expert-domain task that demands deep domain knowledge, task-specific requirements and reasoning capabilities that leverage the domain knowledge to satisfy the task specifications. While scientific text generation…

Computation and Language · Computer Science 2026-04-20 Furkan Şahinuç , Subhabrata Dutta , Iryna Gurevych

Information extraction (IE) aims to extract structural knowledge from plain natural language texts. Recently, generative Large Language Models (LLMs) have demonstrated remarkable capabilities in text understanding and generation. As a…

Computation and Language · Computer Science 2024-11-01 Derong Xu , Wei Chen , Wenjun Peng , Chao Zhang , Tong Xu , Xiangyu Zhao , Xian Wu , Yefeng Zheng , Yang Wang , Enhong Chen

As the application of large language models in various fields continues to expand, materials science also ushers in opportunities for AI-driven innovation. The traditional way of relying on manual search for materials science-related…

Artificial Intelligence · Computer Science 2024-11-14 Chao Huang , Huichen Xiao , Chen Chen , Chunyan Chen , Yi Zhao , Shiyu Du , Yiming Zhang , He Sha , Ruixin Gu

Recent advancements in large language models have sparked interest in utilizing them to aid the peer review process of scientific publication amid the peer review crisis. However, having AI models generate full reviews in the same way as…

Computation and Language · Computer Science 2026-04-03 Tianmai M. Zhang , Neil F. Abernethy

Within the past few decades we have witnessed digital revolution, which moved scholarly communication to electronic media and also resulted in a substantial increase in its volume. Nowadays keeping track with the latest scientific…

Digital Libraries · Computer Science 2017-10-30 Dominika Tkaczyk

Large language models (LLMs) are introducing a paradigm shift in molecular discovery by enabling text-guided interaction with chemical spaces through natural language, symbolic notations, with emerging extensions to incorporate multi-modal…

Machine Learning · Computer Science 2025-05-23 Ziqing Wang , Kexin Zhang , Zihan Zhao , Yibo Wen , Abhishek Pandey , Han Liu , Kaize Ding

The data extraction stages of reviews are resource-intensive, and researchers may seek to expediate data extraction using online (large language models) LLMs and review protocols. Claude 3.5 Sonnet was used to trial two approaches that used…

Computation and Language · Computer Science 2025-07-10 James Stewart-Evans , Emma Wilson , Tessa Langley , Andrew Prayle , Angela Hands , Karen Exley , Jo Leonardi-Bee

The widespread adoption of large language models (LLMs) across industries has increased the demand for high-quality and customizable outputs. However, traditional alignment methods often require retraining large pretrained models, making it…

Computation and Language · Computer Science 2025-12-16 Yi Liu , Dianqing Liu , Mingye Zhu , Junbo Guo , Yongdong Zhang , Zhendong Mao

Medical reports contain rich clinical information but are often unstructured and written in domain-specific language, posing challenges for information extraction. While proprietary large language models (LLMs) have shown promise in…

Computation and Language · Computer Science 2026-03-12 Luc Builtjes , Joeran Bosma , Mathias Prokop , Bram van Ginneken , Alessa Hering

Scientific literature understanding is crucial for extracting targeted information and garnering insights, thereby significantly advancing scientific discovery. Despite the remarkable success of Large Language Models (LLMs), they face…

Machine Learning · Computer Science 2025-04-21 Sihang Li , Jin Huang , Jiaxi Zhuang , Yaorui Shi , Xiaochen Cai , Mingjun Xu , Xiang Wang , Linfeng Zhang , Guolin Ke , Hengxing Cai

Standardized math assessments require expensive human pilot studies to establish the difficulty of test items. We investigate the predictive value of open-source large language models (LLMs) for evaluating the difficulty of multiple-choice…

Computation and Language · Computer Science 2026-04-22 Christabel Acquaye , Yi Ting Huang , Marine Carpuat , Rachel Rudinger

Developing the required technology to assist medical experts in their everyday activities is currently a hot topic in the Artificial Intelligence research field. Thus, a number of large language models (LLMs) and automated benchmarks have…

Computation and Language · Computer Science 2023-12-04 Iakes Goenaga , Aitziber Atutxa , Koldo Gojenola , Maite Oronoz , Rodrigo Agerri

Mathematical equations have been unreasonably effective in describing complex natural phenomena across various scientific disciplines. However, discovering such insightful equations from data presents significant challenges due to the…

Machine Learning · Computer Science 2025-03-21 Parshin Shojaee , Kazem Meidani , Shashank Gupta , Amir Barati Farimani , Chandan K Reddy

Comprehensive evaluation of Large Language Models (LLMs) is an open research problem. Existing evaluations rely on deterministic point estimates generated via greedy decoding. However, we find that deterministic evaluations fail to capture…

Machine Learning · Computer Science 2025-03-04 Yan Scholten , Stephan Günnemann , Leo Schwinn

This paper presents an exploratory study that harnesses the capabilities of large language models (LLMs) to mine key ecological entities from invasion biology literature. Specifically, we focus on extracting species names, their locations,…

Computation and Language · Computer Science 2025-01-31 Jennifer D'Souza , Zachary Laubach , Tarek Al Mustafa , Sina Zarrieß , Robert Frühstückl , Phyllis Illari

Large Language Models (LLMs) are catalyzing a paradigm shift in scientific discovery, evolving from task-specific automation tools into increasingly autonomous agents and fundamentally redefining research processes and human-AI…

Computation and Language · Computer Science 2025-09-18 Tianshi Zheng , Zheye Deng , Hong Ting Tsang , Weiqi Wang , Jiaxin Bai , Zihao Wang , Yangqiu Song

The emergence of Large Language Models (LLMs) has boosted performance and possibilities in various NLP tasks. While the usage of generative AI models like ChatGPT opens up new opportunities for several business use cases, their current…

Computation and Language · Computer Science 2023-09-27 Matthias Engelbach , Dennis Klau , Felix Scheerer , Jens Drawehn , Maximilien Kintz

Relation extraction is a crucial task in natural language processing, with broad applications in knowledge graph construction and literary analysis. However, the complex context and implicit expressions in novel texts pose significant…

Computation and Language · Computer Science 2025-07-08 Yuchen Yan , Hanjie Zhao , Senbin Zhu , Hongde Liu , Zhihong Zhang , Yuxiang Jia