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The displayed tree phylogenetic network model is shown to sit as a natural submodel of the graphical model associated to a directed acyclic graph (DAG). This representation allows to derive a number of results about the displayed tree…

Populations and Evolution · Quantitative Biology 2025-08-01 Seth Sullivant

We consider the problem of estimating the differences between two causal directed acyclic graph (DAG) models with a shared topological order given i.i.d. samples from each model. This is of interest for example in genomics, where changes in…

Methodology · Statistics 2018-11-08 Yuhao Wang , Chandler Squires , Anastasiya Belyaeva , Caroline Uhler

Causal discovery from observational data is pivotal for deciphering complex relationships. Causal Structure Learning (CSL), which focuses on deriving causal Directed Acyclic Graphs (DAGs) from data, faces challenges due to vast DAG spaces…

Artificial Intelligence · Computer Science 2023-11-21 Taiyu Ban , Lyuzhou Chen , Derui Lyu , Xiangyu Wang , Huanhuan Chen

The class ${\cal L}_k$ of $k$-leaf powers consists of graphs $G=(V,E)$ that have a $k$-leaf root, that is, a tree $T$ with leaf set $V$, where $xy \in E$, if and only if the $T$-distance between $x$ and $y$ is at most $k$. Structure and…

Discrete Mathematics · Computer Science 2014-02-07 Ragnar Nevries , Christian Rosenke

Pairwise causal background knowledge about the existence or absence of causal edges and paths is frequently encountered in observational studies. Such constraints allow the shared directed and undirected edges in the constrained subclass of…

Artificial Intelligence · Computer Science 2026-01-06 Zhuangyan Fang , Ruiqi Zhao , Yue Liu , Yangbo He

There exist several architectures to solve influence diagrams using local computations, such as the Shenoy-Shafer, the HUGIN, or the Lazy Propagation architectures. They all extend usual variable elimination algorithms thanks to the use of…

Artificial Intelligence · Computer Science 2012-07-02 Cedric Pralet , Thomas Schiex , Gerard Verfaillie

A graph is a powerful concept for representation of relations between pairs of entities. Data with underlying graph structure can be found across many disciplines and there is a natural desire for understanding such data better. Deep…

Machine Learning · Computer Science 2019-01-25 Martin Simonovsky

This paper addresses the problem of estimating causal directed acyclic graphs in linear non-Gaussian acyclic models with latent confounders (LvLiNGAM). Existing methods assume mutually independent latent confounders or cannot properly…

Machine Learning · Computer Science 2025-10-17 Ming Cai , Penggang Gao , Hisayuki Hara

For $n \geq 2$ let $\Delta$ be a Dynkin diagram of rank $n$ and let $I = {1, >..., n}$ be the set of labels of $\Delta$. A group $G$ admits a weak Phan system of type $\Delta$ over $\mathbb{C}$ if $G$ is generated by subgroups $U_i$, $i \in…

Group Theory · Mathematics 2011-08-18 Ralf Köhl

The paper "Stack-based Algorithms for Pattern Matching on DAGs" generalizes the classical holistic twig join algorithms and proposes PathStackD, TwigStackD and DagStackD to respectively evaluate path, twig and DAG pattern queries on…

Databases · Computer Science 2012-03-30 Qiang Zeng , Hai Zhuge

We study a generalization of the well-known model of broadcasting on trees. Consider a directed acyclic graph (DAG) with a unique source vertex $X$, and suppose all other vertices have indegree $d\geq 2$. Let the vertices at distance $k$…

Information Theory · Computer Science 2020-03-11 Anuran Makur , Elchanan Mossel , Yury Polyanskiy

For a graph $G = (V, E)$, the $\gamma$-graph of $G$, denoted $G(\gamma) = (V(\gamma), E(\gamma))$, is the graph whose vertex set is the collection of minimum dominating sets, or $\gamma$-sets of $G$, and two $\gamma$-sets are adjacent in…

Combinatorics · Mathematics 2019-07-31 Stephen Finbow , Christopher M. van Bommel

Scheduling job flows efficiently and rapidly on distributed computing clusters is one of huge challenges for daily operation of data centers. In a practical scenario, a single job consists of numerous stages with complex dependency relation…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-22 Jinhong Luo , Yunfan Zhou , Xijun Li , Mingxuan Yuan , Jianguo Yao , Jia Zeng

Causal processes in biomedicine may contain cycles, evolve over time or differ between populations. However, many graphical models cannot accommodate these conditions. We propose to model causation using a mixture of directed cyclic graphs…

Machine Learning · Statistics 2020-09-08 Eric V. Strobl

Principled reasoning about the identifiability of causal effects from non-experimental data is an important application of graphical causal models. This paper focuses on effects that are identifiable by covariate adjustment, a commonly used…

Artificial Intelligence · Computer Science 2019-01-25 Benito van der Zander , Maciej Liśkiewicz , Johannes Textor

Identifying controlled direct effects (CDEs) is crucial across numerous scientific domains. While existing methods can identify these effects from causal directed acyclic graphs (DAGs), the true DAG is often unknown in practice. Essential…

Artificial Intelligence · Computer Science 2026-04-09 Timothée Loranchet , Charles K. Assaad

The causal dependence in data is often characterized by Directed Acyclic Graphical (DAG) models, widely used in many areas. Causal discovery aims to recover the DAG structure using observational data. This paper focuses on causal discovery…

Machine Learning · Computer Science 2024-06-12 Boxin Zhao , Weishi Wang , Dingyuan Zhu , Ziqi Liu , Dong Wang , Zhiqiang Zhang , Jun Zhou , Mladen Kolar

Acyclic model, often depicted as a directed acyclic graph (DAG), has been widely employed to represent directional causal relations among collected nodes. In this article, we propose an efficient method to learn linear non-Gaussian DAG in…

Machine Learning · Statistics 2021-11-02 Ruixuan Zhao , Xin He , Junhui Wang

Some temporal networks, most notably citation networks, are naturally represented as directed acyclic graphs (DAGs). To detect communities in DAGs, we propose a modularity for DAGs by defining an appropriate null model (i.e., randomized…

Physics and Society · Physics 2015-08-13 Leo Speidel , Taro Takaguchi , Naoki Masuda

Let $T$ be a rooted tree in which a set $M$ of vertices are marked. The lowest common ancestor (LCA) of $M$ is the unique vertex $\ell$ with the following property: after failing (i.e., deleting) any single vertex $x$ from $T$, the root…

Data Structures and Algorithms · Computer Science 2024-11-26 Asaf Petruschka