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Rooted phylogenetic networks, or more generally, directed acyclic graphs (DAGs), are widely used to model species or gene relationships that traditional rooted trees cannot fully capture, especially in the presence of reticulate processes…

Populations and Evolution · Quantitative Biology 2025-01-24 Anna Lindeberg , Marc Hellmuth

We investigate the connections between clusters and least common ancestors (LCAs) in directed acyclic graphs (DAGs). We focus on the class of DAGs having unique least common ancestors for certain subsets of their minimal elements since…

Discrete Mathematics · Computer Science 2023-09-26 Ameera Vaheeda Shanavas , Manoj Changat , Marc Hellmuth , Peter F. Stadler

Directed acyclic graphs (DAGs) are fundamental structures used across many scientific fields. A key concept in DAGs is the least common ancestor (LCA), which plays a crucial role in understanding hierarchical relationships. Surprisingly…

Phylogenetic networks and, more generally, directed acyclic graphs (DAGs) represent hierarchical structure beyond trees, for instance in the presence of reticulate evolutionary events such as hybridization or horizontal gene transfer. A…

Populations and Evolution · Quantitative Biology 2026-05-22 Marc Hellmuth , Anna Lindeberg , Vincent Moulton

A least common ancestor (LCA) of two leaves in a directed acyclic graph (DAG) is a vertex that is an ancestor of both leaves and has no proper descendant that is also their common ancestor. LCAs capture hierarchical relationships in rooted…

Combinatorics · Mathematics 2026-05-06 Anna Lindeberg , Anton Alfonsson , Vincent Moulton , Guillaume E. Scholz , Marc Hellmuth

The AP-LCA problem asks, given an $n$-node directed acyclic graph (DAG), to compute for every pair of vertices $u$ and $v$ in the DAG a lowest common ancestor (LCA) of $u$ and $v$ if one exists. In this paper we study several interesting…

Data Structures and Algorithms · Computer Science 2022-04-26 Surya Mathialagan , Virginia Vassilevska Williams , Yinzhan Xu

Let $G=(V,E)$ be an $n$-vertex directed acyclic graph (DAG). A lowest common ancestor (LCA) of two vertices $u$ and $v$ is a common ancestor $w$ of $u$ and $v$ such that no descendant of $w$ has the same property. In this paper, we consider…

Data Structures and Algorithms · Computer Science 2020-11-16 Fabrizio Grandoni , Giuseppe F. Italiano , Aleksander Łukasiewicz , Nikos Parotsidis , Przemysław Uznański

A DAG compression of a (typically dense) graph is a simple data structure that stores how vertex clusters are connected, where the clusters are described indirectly as sets of reachable sinks in a directed acyclic graph (DAG). They…

Data Structures and Algorithms · Computer Science 2026-03-24 Florian Chudigiewitsch , Till Tantau , Felix Winkler

Cluster DAGs (C-DAGs) provide an abstraction of causal graphs in which nodes represent clusters of variables, and edges encode both cluster-level causal relationships and dependencies arisen from unobserved confounding. C-DAGs define an…

Artificial Intelligence · Computer Science 2025-11-04 Clément Yvernes , Emilie Devijver , Adèle H. Ribeiro , Marianne Clausel--Lesourd , Éric Gaussier

Estimating the structure of directed acyclic graphs (DAGs) from observational data remains a significant challenge in machine learning. Most research in this area concentrates on learning a single DAG for the entire population. This paper…

Machine Learning · Statistics 2024-02-21 Ryan Thompson , Edwin V. Bonilla , Robert Kohn

The combinatorial problem of learning directed acyclic graphs (DAGs) from data was recently framed as a purely continuous optimization problem by leveraging a differentiable acyclicity characterization of DAGs based on the trace of a matrix…

Machine Learning · Computer Science 2023-01-18 Kevin Bello , Bryon Aragam , Pradeep Ravikumar

A growing body of work has begun to study intervention design for efficient structure learning of causal directed acyclic graphs (DAGs). A typical setting is a causally sufficient setting, i.e. a system with no latent confounders, selection…

Reasoning about the effect of interventions and counterfactuals is a fundamental task found throughout the data sciences. A collection of principles, algorithms, and tools has been developed for performing such tasks in the last decades…

Methodology · Statistics 2023-02-08 Tara V. Anand , Adèle H. Ribeiro , Jin Tian , Elias Bareinboim

Directed Acylic Graphs with a single entry vertex and a single exit vertex (st-DAGs) have many applications. For instance, they are frequently used for modelling flow problems or precedence conditions among tasks, work packages, etc.. This…

Discrete Mathematics · Computer Science 2026-03-30 Ulrich Vogl , Markus Siegle

A directed acyclic graph (DAG) partially represents the conditional independence structure among observations of a system if the local Markov condition holds, that is, if every variable is independent of its non-descendants given its…

Information Theory · Computer Science 2010-10-28 Bastian Steudel , Nihat Ay

Directed acyclic graphical models (DAGs) are often used to describe common structural properties in a family of probability distributions. This paper addresses the question of classifying DAGs up to an isomorphism. By considering Gaussian…

Information Theory · Computer Science 2014-12-24 Hajir Roozbehani , Yury Polyanskiy

This work addresses the problem of learning directed acyclic graphs (DAGs) from nodal observations generated by a linear structural equation model. DAG learning is a central task in signal processing, machine learning, and causal inference,…

Machine Learning · Computer Science 2026-05-20 Samuel Rey , Madeline navarro , Gonzalo Mateos

Transformer models have recently gained popularity in graph representation learning as they have the potential to learn complex relationships beyond the ones captured by regular graph neural networks. The main research question is how to…

Machine Learning · Computer Science 2023-10-31 Yuankai Luo , Veronika Thost , Lei Shi

A directed acyclic graph (DAG) is the most common graphical model for representing causal relationships among a set of variables. When restricted to using only observational data, the structure of the ground truth DAG is identifiable only…

Data Structures and Algorithms · Computer Science 2018-09-12 AmirEmad Ghassami , Saber Salehkaleybar , Negar Kiyavash , Kun Zhang

Blockchain and other decentralized databases, known as distributed ledgers, are designed to store information online where all trusted network members can update the data with transparency. The dynamics of ledger's development can be…

Probability · Mathematics 2025-08-28 Jiewei Feng , Christopher King , Ken R. Duffy
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