Related papers: Improvements on Permutation Reconstruction from Mi…

Permutation patterns and pattern avoidance have been intensively studied in combinatorics and computer science, going back at least to the seminal work of Knuth on stack-sorting (1968). Perhaps the most natural algorithmic question in this…

We obtain a new lower bound on the largest Sidon subset of an arbitrary finite set of integers. If $H(n)$ denotes the minimum, over all $n$-element subsets of $\mathbb Z$, of the largest Sidon subset they contain, we prove that $H(n)…

We consider the problem of determining the maximum number of moves required to sort a permutation of $[n]$ using cut-and-paste operations, in which a segment is cut out and then pasted into the remaining string, possibly reversed. We give…

Given \(k\) strings each of length at most $n$, computing the shortest common supersequence of them is a well-known NP-hard problem (when \(k\) is unbounded). On the other hand, when \(k=2\), such a shortest common supersequence can be…

We study the diametric problem (i.e., optimal anticodes) in the space of permutations under the Ulam distance. That is, let $S_n$ denote the set of permutations on $n$ symbols, and for each $\sigma, \tau \in S_n$, define their Ulam distance…

Trace reconstruction is the problem of learning an unknown string $x$ from independent traces of $x$, where traces are generated by independently deleting each bit of $x$ with some deletion probability $q$. In this paper, we initiate the…

This study investigates whether reoptimization can help in solving the closest substring problem. We are dealing with the following reoptimization scenario. Suppose, we have an optimal l-length closest substring of a given set of sequences…

We construct near-optimal coresets for kernel density estimates for points in $\mathbb{R}^d$ when the kernel is positive definite. Specifically we show a polynomial time construction for a coreset of size $O(\sqrt{d}/\varepsilon\cdot…

The problem of string reconstruction based on its substrings spectrum has received significant attention recently due to its applicability to DNA data storage and sequencing. In contrast to previous works, we consider in this paper a setup…

Consider the problem of reconstructing a multidimensional signal from an underdetermined set of measurements, as in the setting of compressed sensing. Without any additional assumptions, this problem is ill-posed. However, for signals such…

Numerical evidence suggests that certain permutation patterns of length k are easier to avoid than any other patterns of that same length. We prove that these patterns are avoided by no more than (2.25k^2)^n permutations of length n. In…

We construct skew corner-free subsets of $[n]^2$ of size $n^2\exp(-O(\sqrt{\log n}))$, thereby improving on recent bounds of the form $\Omega(n^{5/4})$ obtained by Pohoata and Zakharov. In the other direction, we prove that any such set has…

This paper is part of the ongoing effort to study high-dimensional permutations. We prove the analogue to the Erd\H{o}s-Szekeres theorem: For every $k\ge1$, every order-$n$ $k$-dimensional permutation contains a monotone subsequence of…

Let $A_2(n,d)$ be the maximum size of a binary code of length $n$ and minimum distance $d$. In this paper we present the following new lower bounds: $A_2(18,4) \ge 5632$, $A_2(21,4) \ge 40960$, $A_2(22,4) \ge 81920$, $A_2(23,4) \ge 163840$,…

For each integer k >= 2, let F(k) denote the largest n for which there exists a permutation \sigma \in S_n, all of whose patterns of length k are distinct. We prove that F(k) = k + \lfloor \sqrt{2k-3} \rfloor + e_k, where e_k \in {-1,0} for…

The palindromic fingerprint of a string $S[1\ldots n]$ is the set $PF(S) = \{(i,j)~|~ S[i\ldots j] \textit{ is a maximal }\\ \textit{palindrome substring of } S\}$. In this work, we consider the problem of string reconstruction from a…

In the trace reconstruction problem, one seeks to reconstruct a binary string $s$ from a collection of traces, each of which is obtained by passing $s$ through a deletion channel. It is known that $\exp(\tilde O(n^{1/5}))$ traces suffice to…

Let $\mathcal{P}$ be an $n$-point subset of Euclidean space and $d\geq 3$ be an integer. In this paper we study the following question: What is the smallest (normalized) relative change of the volume of subsets of $\mathcal{P}$ when it is…

For $\Lambda$-$n$-coalescents with mutation, we analyse the size $O_n$ of the partition block of $i\in\{1,\ldots,n\}$ at the time where the first mutation appears on the tree that affects $i$ and is shared with any other…

The ''trace reconstruction'' problem asks, given an unknown binary string $x$ and a channel that repeatedly returns ''traces'' of $x$ with each bit randomly deleted with some probability $p$, how many traces are needed to recover $x$? There…