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In the intelligent diagnosis of bimodal (gray-scale and contrast-enhanced) ultrasound videos, medical domain knowledge such as the way sonographers browse videos, the particular areas they emphasize, and the features they pay special…

Computer Vision and Pattern Recognition · Computer Science 2024-09-04 Chengqian Zhao , Zhao Yao , Zhaoyu Hu , Yuanxin Xie , Yafang Zhang , Yuanyuan Wang , Shuo Li , Jianhua Zhou , Jianqiao Zhou , Yin Wang , Jinhua Yu

Coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has a worldwide devastating effect. The understanding of evolution and transmission of SARS-CoV-2 is of paramount importance for the…

Quantitative Methods · Quantitative Biology 2021-01-01 Yuta Hozumi , Rui Wang , Changchuan Yin , Guo-Wei Wei

Discovering mutations enhancing protein-protein interactions (PPIs) is critical for advancing biomedical research and developing improved therapeutics. While machine learning approaches have substantially advanced the field, they often…

The generation speed of LLMs are bottlenecked by autoregressive decoding, where tokens are predicted sequentially one by one. Alternatively, diffusion large language models (dLLMs) theoretically allow for parallel token generation, but in…

Computation and Language · Computer Science 2025-11-03 Daniel Israel , Guy Van den Broeck , Aditya Grover

Tabular data underpins most high-value prediction problems in science and industry, and TabPFN has driven the foundation model revolution for this modality. Designed with feedback from our users, TabPFN-3 builds on this foundation to scale…

Pansharpening aims to fuse a high-resolution panchromatic (PAN) image with a low-resolution multispectral (LRMS) image to generate a high-resolution multispectral image (HRMS). Conventional deep learning-based methods are inherently limited…

Computer Vision and Pattern Recognition · Computer Science 2025-12-10 Xianghong Xiao , Zeyu Xia , Zhou Fei , Jinliang Xiao , Haorui Chen , Liangjian Deng

Now that disease-modifying therapies for Alzheimer disease have been approved by regulatory agencies, the early, objective, and accurate clinical diagnosis of AD based on the lowest-cost measurement modalities possible has become an…

Image and Video Processing · Electrical Eng. & Systems 2025-11-13 Faisal Ahmed , Taymaz Akan , Fatih Gelir , Owen T. Carmichael , Elizabeth A. Disbrow , Steven A. Conrad , Mohammad A. N. Bhuiyan

In recent years, self-supervised learning (SSL) models have made significant progress in audio deepfake detection (ADD) tasks. However, existing SSL models mainly rely on large-scale real speech for pre-training and lack the learning of…

Sound · Computer Science 2025-09-05 Yunqi Hao , Yihao Chen , Minqiang Xu , Jianbo Zhan , Liang He , Lei Fang , Sian Fang , Lin Liu

The widely used gene quantisation technique, Lateral Flow Device (LFD), is now commonly used to detect the presence of SARS-CoV-2. It is enabling the control and prevention of the spread of the virus. Depending on the viral load, LFD have…

Machine Learning · Computer Science 2022-05-27 Neeraj Vashistha

Simulations of biological macromolecules play an important role in understanding the physical basis of a number of complex processes such as protein folding. Even with increasing computational power and evolution of specialized…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-09-18 Hyungro Lee , Heng Ma , Matteo Turilli , Debsindhu Bhowmik , Shantenu Jha , Arvind Ramanathan

Due to its high transmissibility, Omicron BA.1 ousted the Delta variant to become a dominating variant in late 2021 and was replaced by more transmissible Omicron BA.2 in March 2022. An important question is which new variants will dominate…

Biomolecules · Quantitative Biology 2022-05-03 Jiahui Chen , Yuchi Qiu , Rui Wang , Guo-Wei Wei

Development of new drugs is an expensive and time-consuming process. Due to the world-wide SARS-CoV-2 outbreak, it is essential that new drugs for SARS-CoV-2 are developed as soon as possible. Drug repurposing techniques can reduce the time…

Machine Learning · Computer Science 2022-01-19 Shrimon Mukherjee , Madhusudan Ghosh , Partha Basuchowdhuri

Non-rigid 3D mesh matching is a critical step in computer vision and computer graphics pipelines. We tackle matching meshes that contain topological artefacts which can break the assumption made by current approaches. While Functional Maps…

Computer Vision and Pattern Recognition · Computer Science 2025-09-09 Aymen Merrouche , Stefanie Wuhrer , Edmond Boyer

Deep learning generally suffers from enormous computational resources and time-consuming training processes. Broad Learning System (BLS) and its convolutional variants have been proposed to mitigate these issues and have achieved superb…

Machine Learning · Computer Science 2023-04-04 Chunyu Lei , C. L. Philip Chen , Jifeng Guo , Tong Zhang

Training very deep convolutional networks is challenging, requiring significant computational resources and time. Existing acceleration methods often depend on specific architectures or require network modifications. We introduce…

Computer Vision and Pattern Recognition · Computer Science 2024-12-25 Evgeny Hershkovitch Neiterman , Gil Ben-Artzi

In MR fingerprinting (MRF) reconstruction, measured data is pattern-matched to simulated signals to extract quantitative tissue parameters. A critical drawback to this approach is the exponentially increasing compute time for mapping of…

Medical Physics · Physics 2024-07-17 Victoria Y. Yu , Kathryn R. Tringale , Ricardo Otazo , Ouri Cohen

Recent multi-LLM agent systems have shown promising capabilities for automated problem-solving, yet they predominantly rely on frozen agents or static fine-tuning pipelines. To address this limitation, our primary contribution is ATLAS…

Artificial Intelligence · Computer Science 2026-05-22 Ujin Jeon , Jiyong Kwon , Madison Ann Sullivan , Caleb Eunho Lee , Guang Lin

The rapid scaling of large language models (LLMs) has unveiled critical limitations in current hardware architectures, including constraints in memory capacity, computational efficiency, and interconnection bandwidth. DeepSeek-V3, trained…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-24 Chenggang Zhao , Chengqi Deng , Chong Ruan , Damai Dai , Huazuo Gao , Jiashi Li , Liyue Zhang , Panpan Huang , Shangyan Zhou , Shirong Ma , Wenfeng Liang , Ying He , Yuqing Wang , Yuxuan Liu , Y. X. Wei

In medical imaging, most of the image registration methods implicitly assume a one-to-one correspondence between the source and target images (i.e., diffeomorphism). However, this is not necessarily the case when dealing with pathological…

Image and Video Processing · Electrical Eng. & Systems 2022-02-03 Matthis Maillard , Anton François , Joan Glaunès , Isabelle Bloch , Pietro Gori

We present a system for the prediction of microsatellite instability (MSI) from H&E images of colorectal cancer using deep learning (DL) techniques customized for tissue microarrays (TMAs). The system incorporates an end-to-end image…

Computer Vision and Pattern Recognition · Computer Science 2021-10-29 Aurelia Bustos , Artemio Payá , Andres Torrubia , Rodrigo Jover , Xavier Llor , Xavier Bessa , Antoni Castells , Cristina Alenda