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Large Language Models (LLMs) have emerged as a transformative power in enhancing natural language comprehension, representing a significant stride toward artificial general intelligence. The application of LLMs extends beyond conventional…

The extraction of structured knowledge from scientific literature remains a major bottleneck in nutraceutical research, particularly when identifying microbial strains involved in compound biosynthesis. This study presents a domain-adapted…

Quantitative Methods · Quantitative Biology 2025-12-30 Xinyang Sun , Nipon Sarmah , Miao Guo

High-quality scientific extreme summary (TLDR) facilitates effective science communication. How do large language models (LLMs) perform in generating them? How are LLM-generated summaries different from those written by human experts?…

Computation and Language · Computer Science 2025-12-30 Zhuoqi Lyu , Qing Ke

Scientific Large Language Models (Sci-LLMs) have emerged as a promising frontier for accelerating biological discovery. However, these models face a fundamental challenge when processing raw biomolecular sequences: the tokenization dilemma.…

The proliferation of deep learning in natural language processing (NLP) has led to the development and release of innovative technologies capable of understanding and generating human language with remarkable proficiency. Atinuke, a…

Computation and Language · Computer Science 2024-02-06 Abiodun Finbarrs Oketunji

The internet is saturated with low-density, high-redundancy information, such as social media comments, repetitive news, and lengthy discussions, making it difficult to extract valuable insights efficiently. Multi-layer nested JSON…

Artificial Intelligence · Computer Science 2025-10-01 Zhicheng Zhou , Jing Li , Suming Qiu , Junjie Huang , Linyuan Qiu , Zhijie Sun

Large Language Models (LLMs) are transforming information extraction from academic literature, offering new possibilities for knowledge management. This study presents an LLM-based system designed to extract detailed information about…

Information Retrieval · Computer Science 2025-05-29 Jiseung Yoo , Curran Mahowald , Meiyu Li , Wei Ai

The understanding of large-scale scientific software poses significant challenges due to its diverse codebase, extensive code length, and target computing architectures. The emergence of generative AI, specifically large language models…

Software Engineering · Computer Science 2024-03-19 Kareem Shaik , Dali Wang , Weijian Zheng , Qinglei Cao , Heng Fan , Peter Schwartz , Yunhe Feng

It is desirable to coarsely classify short scientific texts, such as grant or publication abstracts, for strategic insight or research portfolio management. These texts efficiently transmit dense information to experts possessing a rich…

Artificial Intelligence · Computer Science 2024-07-09 Harsh Sakhrani , Naseela Pervez , Anirudh Ravi Kumar , Fred Morstatter , Alexandra Graddy Reed , Andrea Belz

We present BioLunar, developed using the Lunar framework, as a tool for supporting biological analyses, with a particular emphasis on molecular-level evidence enrichment for biomarker discovery in oncology. The platform integrates Large…

Data-driven research in Additive Manufacturing (AM) has gained significant success in recent years. This has led to a plethora of scientific literature to emerge. The knowledge in these works consists of AM and Artificial Intelligence (AI)…

Information Retrieval · Computer Science 2024-07-29 Mutahar Safdar , Jiarui Xie , Andrei Mircea , Yaoyao Fiona Zhao

Fine-tuning Large Language Models (LLMs) is now a common approach for text classification in a wide range of applications. When labeled documents are scarce, active learning helps save annotation efforts but requires retraining of massive…

Machine Learning · Computer Science 2024-02-27 Artem Vysogorets , Achintya Gopal

We introduce a simple approach that uses a large language model (LLM) to automatically implement a fully interpretable rule-based data-to-text system in pure Python. Experimental evaluation on the WebNLG dataset showed that such a…

Computation and Language · Computer Science 2025-03-03 Jędrzej Warczyński , Mateusz Lango , Ondrej Dusek

Large Language Models (LLMs) have shown remarkable prowess in text generation, yet producing long-form, factual documents grounded in extensive external knowledge bases remains a significant challenge. Existing "top-down" methods, which…

Computation and Language · Computer Science 2025-09-17 Binquan Ji , Jiaqi Wang , Ruiting Li , Xingchen Han , Yiyang Qi , Shichao Wang , Yifei Lu , Yuantao Han , Feiliang Ren

Structured science summaries or research contributions using properties or dimensions beyond traditional keywords enhances science findability. Current methods, such as those used by the Open Research Knowledge Graph (ORKG), involve…

Artificial Intelligence · Computer Science 2024-05-06 Vladyslav Nechakhin , Jennifer D'Souza , Steffen Eger

Large language models (LLMs) are a class of artificial intelligence models based on deep learning, which have great performance in various tasks, especially in natural language processing (NLP). Large language models typically consist of…

Quantitative Methods · Quantitative Biology 2025-02-04 Jiajia Liu , Mengyuan Yang , Yankai Yu , Haixia Xu , Tiangang Wang , Kang Li , Xiaobo Zhou

Large Language Models (LLMs) continue to advance natural language processing with their ability to generate human-like text across a range of tasks. Despite the remarkable success of LLMs in Natural Language Processing (NLP), their…

Computation and Language · Computer Science 2025-07-08 Walid Mohamed Aly , Taysir Hassan A. Soliman , Amr Mohamed AbdelAziz

Large-scale data sets on scholarly publications are the basis for a variety of bibliometric analyses and natural language processing (NLP) applications. Especially data sets derived from publication's full-text have recently gained…

Digital Libraries · Computer Science 2023-11-06 Tarek Saier , Johan Krause , Michael Färber

In recent years, Large Language Models (LLMs) have emerged as transformative tools across numerous domains, impacting how professionals approach complex analytical tasks. This systematic mapping study comprehensively examines the…

Computers and Society · Computer Science 2025-08-19 Sai Sanjna Chintakunta , Nathalia Nascimento , Everton Guimaraes