Related papers: Longest subsequence for certain repeated up/down p…

Repeat finding in strings has important applications in subfields such as computational biology. Surprisingly, all prior work on repeat finding did not consider the constraint on the locality of repeats. In this paper, we propose and study…

Finding the longest common subsequence in $k$-length substrings (LCS$k$) is a recently proposed problem motivated by computational biology. This is a generalization of the well-known LCS problem in which matching symbols from two sequences…

The number of 123-avoiding permutation on $\{1,2,\ldots,n\}$ with a fixed leading terms is counted by the ballot numbers. The same holds for $132$-avoiding permutations. These results were proved by Miner and Pak using the…

Palindromes are strings that read the same forward and backward. Problems of computing palindromic structures in strings have been studied for many years with a motivation of their application to biology. The longest palindrome problem is…

The Erd\H os-R\'enyi law states that given a sequence $\{X_j\}_{j=1}^\infty$ of i.i.d.~($p$) coin-tosses, the longest run $L_n$ of heads in the first $n$ coin tosses approaches $\log_{1/p}n$ almost surely. In this paper we explore a…

An occurrence of a repeated substring $u$ in a string $S$ is called a net occurrence if extending the occurrence to the left or to the right decreases the number of occurrences to 1. The net frequency (NF) of a repeated substring $u$ in a…

We define a class L_{n, k} of permutations that generalizes alternating (up-down) permutations and give bijective proofs of certain pattern-avoidance results for this class. As a special case of our results, we give two bijections between…

A weakly consecutive sequence (WCS) is a permutation $\sigma$ of $\{1, \ldots, k\}$ such that if an integer $d$ divides $\sigma(i)$, then $d$ also divides $\sigma(i \pm d)$ insofar as these are defined. The structure of weakly consecutive…

This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…

Consider a finite sequence of permutations of the elements 1,...,n, with the property that each element changes its position by at most 1 from any permutation to the next. We call such a sequence a tangle, and we define a move of element i…

We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…

We study long $r$-twins in random words and permutations. Motivated by questions posed in works of Dudek-Grytczuk-Ruci\'nski, we obtain the following. For a uniform word in $[k]^n$ we prove sharp one-sided tail bounds showing that the…

Let A be a set of integers dense in a finite interval. We establish upper and lower bounds for the longest regularly-spaced and convex subsets of A and of A-A.

We study new statistics on permutations that are variations on the descent and the inversion statistics. In particular, we consider the alternating descent set of a permutation sigma = sigma_1sigma_2...sigma_n defined as the set of indices…

We study higher order convexity properties of random point sets in the unit square. Given $n$ uniform i.i.d random points, we derive asymptotic estimates for the maximal number of them which are in $k$-monotone position, subject to mild…

Let $C(n)$ denote the number of permutations $\sigma$ of $[n]=\{1,2,\dots,n\}$ such that $\gcd(j,\sigma(j))=1$ for each $j\in[n]$. We prove that for $n$ sufficiently large, $n!/3.73^n < C(n) < n!/2.5^n$.

Following Anders and Archer, we say that an unordered rooted labeled forest avoids the pattern $\sigma\in\mathcal{S}_k$ if in each tree, each sequence of labels along the shortest path from the root to a vertex does not contain a…

We consider the canonical generalization of the well-studied Longest Increasing Subsequence problem to multiple sequences, called $k$-LCIS: Given $k$ integer sequences $X_1,\dots,X_k$ of length at most $n$, the task is to determine the…

The Permutation Pattern Matching problem asks, given two permutations $\sigma$ on $n$ elements and $\pi$, whether $\sigma$ admits a subsequence with the same relative order as $\pi$ (or, in the counting version, how many such subsequences…

A permutation is defined to be cycle-up-down if it is a product of cycles that, when written starting with their smallest element, have an up-down pattern. We prove bijectively and analytically that these permutations are enumerated by the…