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We introduce the elEmBERT model for chemical classification tasks. It is based on deep learning techniques, such as a multilayer encoder architecture. We demonstrate the opportunities offered by our approach on sets of organic, inorganic…

Chemical Physics · Physics 2024-08-20 Shokirbek Shermukhamedov , Dilorom Mamurjonova , Michael Probst

With the widespread adoption of autonomous vehicles and robotics, amodal completion, which reconstructs the occluded parts of people and objects in an image, has become increasingly crucial. Just as humans infer hidden regions based on…

Computer Vision and Pattern Recognition · Computer Science 2026-03-31 Heecheol Yun , Eunho Yang

Medical document OCR is challenging due to complex layouts, domain-specific terminology, and noisy annotations, while requiring strict field-level exact matching. Existing OCR systems and general-purpose vision-language models often fail to…

Computer Vision and Pattern Recognition · Computer Science 2026-02-09 Wenjie Wang , Wei Wu , Ying Liu , Yuan Zhao , Xiaole Lv , Liang Diao , Zengjian Fan , Wenfeng Xie , Ziling Lin , De Shi , Lin Huang , Kaihe Xu , Hong Li

Recent studies on machine reading comprehension have focused on text-level understanding but have not yet reached the level of human understanding of the visual layout and content of real-world documents. In this study, we introduce a new…

Computation and Language · Computer Science 2021-05-11 Ryota Tanaka , Kyosuke Nishida , Sen Yoshida

Current multimodal large language models (MLLMs) are mainly focused on the understanding and processing of perceptual modalities such as images and videos, while their capability for scientific data understanding remains insufficient. To…

Artificial Intelligence · Computer Science 2026-05-14 Yanjie Li , Lina Yu , Weijun Li , Min Wu , Liping Zhang , Jingyi Liu , Yusong Deng , Mingzhu Wan , Xin Ning

Large language models (LLMs) have demonstrated broad utility across molecular domains, spanning drug discovery and materials design. Analyzing LLMs' latent representations is crucial for elucidating their underlying mechanisms, improving…

Machine Learning · Computer Science 2026-02-03 Zhuoran Li , Xu Sun , Wanyu Lin , Jiannong Cao

Recent advances in multimodal large language models (MLLMs) have substantially expanded the capabilities of multimodal retrieval, enabling systems to align and retrieve information across visual and textual modalities. Yet, existing…

Computer Vision and Pattern Recognition · Computer Science 2026-03-03 Xuan Lu , Kangle Li , Haohang Huang , Rui Meng , Wenjun Zeng , Xiaoyu Shen

One-dimensional NMR spectroscopy is one of the most widely used techniques for the characterization of organic compounds and natural products. For molecules with up to 36 non-hydrogen atoms, the number of possible structures has been…

A crucial component for the scene text based reasoning required for TextVQA and TextCaps datasets involve detecting and recognizing text present in the images using an optical character recognition (OCR) system. The current systems are…

Computer Vision and Pattern Recognition · Computer Science 2021-05-13 Amanpreet Singh , Guan Pang , Mandy Toh , Jing Huang , Wojciech Galuba , Tal Hassner

In this work, we aim to address the challenging task of open set recognition (OSR). Many recent OSR methods rely on auto-encoders to extract class-specific features by a reconstruction strategy, requiring the network to restore the input…

Computer Vision and Pattern Recognition · Computer Science 2021-08-09 Xin Sun , Henghui Ding , Chi Zhang , Guosheng Lin , Keck-Voon Ling

Molecular Property Prediction (MPP) plays a pivotal role across diverse domains, spanning drug discovery, material science, and environmental chemistry. Fueled by the exponential growth of chemical data and the evolution of artificial…

Machine Learning · Computer Science 2024-08-23 Tanya Liyaqat , Tanvir Ahmad , Chandni Saxena

Properties of molecules are indicative of their functions and thus are useful in many applications. With the advances of deep learning methods, computational approaches for predicting molecular properties are gaining increasing momentum.…

Quantitative Methods · Quantitative Biology 2021-07-07 Zhengyang Wang , Meng Liu , Youzhi Luo , Zhao Xu , Yaochen Xie , Limei Wang , Lei Cai , Qi Qi , Zhuoning Yuan , Tianbao Yang , Shuiwang Ji

Occlusion in face recognition is a common yet challenging problem. While sparse representation based classification (SRC) has been shown promising performance in laboratory conditions (i.e. noiseless or random pixel corrupted), it performs…

Computer Vision and Pattern Recognition · Computer Science 2015-07-28 Yandong Wen , Weiyang Liu , Meng Yang , Yuli Fu , Youjun Xiang , Rui Hu

Since the advent of machine learning, interpretability has remained a persistent challenge, becoming increasingly urgent as generative models support high-stakes applications in drug and material discovery. Recent advances in large language…

Machine Learning · Computer Science 2025-12-10 Jaron Cohen , Alexander G. Hasson , Sara Tanovic

The development of large language models and multi-modal models has enabled the appealing idea of generating novel molecules from text descriptions. Generative modeling would shift the paradigm from relying on large-scale chemical screening…

Machine Learning · Computer Science 2025-08-25 Yifan Deng , Spencer S. Ericksen , Anthony Gitter

In deep learning for drug discovery, chemical data are often represented as simplified molecular-input line-entry system (SMILES) sequences which allow for straightforward implementation of natural language processing methodologies, one…

Machine Learning · Computer Science 2023-10-05 Kathryn E. Kirchoff , Travis Maxfield , Alexander Tropsha , Shawn M. Gomez

Designing molecules with desirable physiochemical properties and functionalities is a long-standing challenge in chemistry, material science, and drug discovery. Recently, machine learning-based generative models have emerged as promising…

Biomolecules · Quantitative Biology 2023-04-26 Zaixi Zhang , Qi Liu , Chee-Kong Lee , Chang-Yu Hsieh , Enhong Chen

Recent advances in Large Vision-Language models (LVLM) have spurred significant progress in document parsing task. Compared to traditional pipeline-based methods, end-to-end paradigms have shown their excellence in converting PDF images…

Computer Vision and Pattern Recognition · Computer Science 2025-09-25 Xiangyang Chen , Shuzhao Li , Xiuwen Zhu , Yongfan Chen , Fan Yang , Cheng Fang , Lin Qu , Xiaoxiao Xu , Hu Wei , Minggang Wu

Molecular dynamics (MD) is a powerful approach for modelling molecular systems, but it remains computationally intensive on spatial and time scales of many macromolecular systems of biological interest. To explore the opportunities offered…

Biomolecules · Quantitative Biology 2025-08-07 Mhd Hussein Murtada , Z. Faidon Brotzakis , Michele Vendruscolo

The advent of highly accurate protein structure prediction methods has fueled an exponential expansion of the protein structure database. Consequently, there is a rising demand for rapid and precise structural homolog search. Traditional…

Biomolecules · Quantitative Biology 2023-12-01 Yuan Liu , Hong-Bin Shen