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Models relating to the Species-Area curve are usually defined at the species level, and concerned only with ecological timescales. We examine an individual-based model of co-evolution on a spatial lattice based on the Tangled Nature model,…

Populations and Evolution · Quantitative Biology 2007-05-23 Daniel Lawson , Henrik Jeldtoft Jensen

Microclimate models are essential for linking climate to ecological processes, yet most physically based frameworks estimate temperature independently for each spatial unit and rely on simplified representations of lateral heat exchange. As…

Machine Learning · Computer Science 2026-03-17 Idan Sulami , Alon Itzkovitch , Michael R. Kearney , Moni Shahar , Ofir Levy

Dispersal is a well recognized driver of ecological and evolutionary dynamics, and simultaneously an evolving trait. Dispersal evolution has traditionally been studied in single-species metapopulations so that it remains unclear how…

Drylands are pattern-forming systems showing self-organized vegetation patchiness, multiplicity of stable states and fronts separating domains of alternative stable states. Pattern dynamics, induced by droughts or disturbances, can result…

Pattern Formation and Solitons · Physics 2014-03-05 Yuval R. Zelnik , Shai Kinast , Hezi Yizhaq , Golan Bel , Ehud Meron

Understanding systems level behaviour of many interacting agents is challenging in various ways, here we'll focus on the how the interaction between components can lead to hierarchical structures with different types of dynamics, or…

Populations and Evolution · Quantitative Biology 2018-12-26 Henrik Jeldtoft Jensen

Dynamic multilayer networks frequently represent the structure of multiple co-evolving relations; however, statistical models are not well-developed for this prevalent network type. Here, we propose a new latent space model for dynamic…

Methodology · Statistics 2021-03-25 Joshua Daniel Loyal , Yuguo Chen

From infiltration of water into the soil during rainstorms to seasonal plant growth and death, the ecohydrological processes that are thought to be relevant to the formation of banded vegetation patterns in drylands occur across multiple…

Pattern Formation and Solitons · Physics 2020-06-24 Punit Gandhi , Sara Bonetti , Sarah Iams , Amilcare Porporato , Mary Silber

Advanced machine learning models have recently achieved high predictive accuracy for weather and climate prediction. However, these complex models often lack inherent transparency and interpretability, acting as "black boxes" that impede…

Atmospheric and Oceanic Physics · Physics 2024-03-29 Ruyi Yang , Jingyu Hu , Zihao Li , Jianli Mu , Tingzhao Yu , Jiangjiang Xia , Xuhong Li , Aritra Dasgupta , Haoyi Xiong

Forest transitions, characterized by dynamic shifts between forest, agricultural, and abandoned lands, are complex phenomena. This study developed a stochastic differential equation model to capture the intricate dynamics of these…

Machine Learning · Statistics 2025-07-30 Satoshi Kumabe , Tianyu Song , Ton Viet Ta

We explore the connection between migration patterns and emergent behaviors of evolving populations in spatially heterogeneous environments. Despite extensive studies in ecologically and medically important systems, a unifying framework…

Populations and Evolution · Quantitative Biology 2024-01-10 Casey O. Barkan , Shenshen Wang

Many machine learning (ML) approaches are widely used to generate bioclimatic models for prediction of geographic range of organism as a function of climate. Applications such as prediction of range shift in organism, range of invasive…

Machine Learning · Computer Science 2013-06-19 Maumita Bhattacharya

We have generalized our ``unified'' model of evolutionary ecology by taking into account the possible movements of the organisms from one ``patch'' to another within the same eco-system. We model the spatial extension of the eco-system…

Populations and Evolution · Quantitative Biology 2009-11-10 Dietrich Stauffer , Ambarish Kunwar , Debashish Chowdhury

In the past decades human activities caused global Earth system changes, e.g., climate change or biodiversity loss. Simultaneously, these associated impacts have increased environmental awareness within societies across the globe, thereby…

Physics and Society · Physics 2021-05-11 Paul Manuel Müller , Jobst Heitzig , Jürgen Kurths , Kathy Lüdge , Marc Wiedermann

The modeling of environmental ecosystems plays a pivotal role in the sustainable management of our planet. Accurate prediction of key environmental variables over space and time can aid in informed policy and decision-making, thus improving…

Computation and Language · Computer Science 2024-08-13 Haoran Li , Junqi Liu , Zexian Wang , Shiyuan Luo , Xiaowei Jia , Huaxiu Yao

Ecosystems, which are intricate amalgams of biological communities and their surrounding environments, continually evolve under the influence of their myriad interactions. The world is currently facing intensifying environmental…

Biological Physics · Physics 2023-11-23 Ikumi Kobayashi

Accurate predictions and representations of plant growth patterns in simulated and controlled environments are important for addressing various challenges in plant phenomics research. This review explores various works on state-of-the-art…

Quantitative Methods · Quantitative Biology 2025-07-17 Mohamed Debbagh , Shangpeng Sun , Mark Lefsrud

Many machine learning (ML) approaches are widely used to generate bioclimatic models for prediction of geographic range of organism as a function of climate. Applications such as prediction of range shift in organism, range of invasive…

Machine Learning · Computer Science 2013-03-13 Maumita Bhattacharya

Understanding the rules underlying organismal development is a major unsolved problem in biology. Each cell in a developing organism responds to signals in its local environment by dividing, excreting, consuming, or reorganizing, yet how…

Cell Behavior · Quantitative Biology 2025-08-20 Ramya Deshpande , Francesco Mottes , Ariana-Dalia Vlad , Michael P. Brenner , Alma dal Co

Reductions in natural habitats urge that we better understand species' interconnection and how biological communities respond to environmental changes. However, ecological studies of species' interactions are limited by their geographic and…

Methodology · Statistics 2023-02-21 Georgia Papadogeorgou , Carolina Bello , Otso Ovaskainen , David B. Dunson

Data acquisition in animal ecology is rapidly accelerating due to inexpensive and accessible sensors such as smartphones, drones, satellites, audio recorders and bio-logging devices. These new technologies and the data they generate hold…