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Related papers: Explainable Deep Learning Framework for SERS Bio-q…

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Deep learning is a topic of considerable current interest. The availability of massive data collections and powerful software resources has led to an impressive amount of results in many application areas that reveal essential but hidden…

Machine Learning · Computer Science 2023-01-31 Gianluigi Pillonetto , Aleksandr Aravkin , Daniel Gedon , Lennart Ljung , Antônio H. Ribeiro , Thomas B. Schön

The technological advance of High Numerical Aperture Extreme Ultraviolet Lithography (High NA EUVL) has opened the gates to extensive researches on thinner photoresists (below 30nm), necessary for the industrial implementation of High NA…

Computer Vision and Pattern Recognition · Computer Science 2023-10-24 Sara Sacchi , Bappaditya Dey , Iacopo Mochi , Sandip Halder , Philippe Leray

Multiple sclerosis (MS) is a demyelinating disease of the central nervous system (CNS). A reliable measure of the tissue myelin content is therefore essential for the understanding of the physiopathology of MS, tracking progression and…

Computer Vision and Pattern Recognition · Computer Science 2018-09-17 Wen Wei , Emilie Poirion , Benedetta Bodini , Stanley Durrleman , Nicholas Ayache , Bruno Stankoff , Olivier Colliot

Accurate and reliable tumor segmentation is essential in medical imaging analysis for improving diagnosis, treatment planning, and monitoring. However, existing segmentation models often lack robust mechanisms for quantifying the…

Image and Video Processing · Electrical Eng. & Systems 2025-03-14 Seyed Sina Ziaee , Farhad Maleki , Katie Ovens

We theoretically investigate the enhancement of surface enhanced Raman spectroscopy (SERS) using hyperbolic stratified nanostructures and compare to metal nanoresonators. The photon Green function of each nanostructure within its…

High resolution magnetic resonance (MR) imaging is desirable in many clinical applications due to its contribution to more accurate subsequent analyses and early clinical diagnoses. Single image super resolution (SISR) is an effective and…

Computer Vision and Pattern Recognition · Computer Science 2019-09-17 Xiaole Zhao , Yulun Zhang , Tao Zhang , Xueming Zou

This paper presents a novel approach to accurately classify the hallmarks of cancer, which is a crucial task in cancer research. Our proposed method utilizes the Bidirectional Encoder Representations from Transformers (BERT) architecture,…

Computation and Language · Computer Science 2023-06-08 Sultan Zavrak , Seyhmus Yilmaz

This study addresses critical gaps in automated lymphoma segmentation from PET/CT images, focusing on issues often overlooked in existing literature. While deep learning has been applied for lymphoma lesion segmentation, few studies…

We propose a novel deep neural network architecture to integrate imaging and genetics data, as guided by diagnosis, that provides interpretable biomarkers. Our model consists of an encoder, a decoder and a classifier. The encoder learns a…

We present a machine learning-based approach for characterising the environment that affects the dynamics of an open quantum system. We focus on the case of an exactly solvable spin-boson model, where the system-environment interaction,…

Deep Neural Networks (DNNs) have advanced applications in domains such as healthcare, autonomous systems, and scene understanding, yet the internal semantics of their hidden neurons remain poorly understood. Prior work introduced a Concept…

Computer Vision and Pattern Recognition · Computer Science 2026-03-03 Moumita Sen Sarma , Samatha Ereshi Akkamahadevi , Pascal Hitzler

In drug-discovery-related tasks such as virtual screening, machine learning is emerging as a promising way to predict molecular properties. Conventionally, molecular fingerprints (numerical representations of molecules) are calculated…

Machine Learning · Computer Science 2019-11-13 Shion Honda , Shoi Shi , Hiroki R. Ueda

Chromatin sensitive partial wave spectroscopic (csPWS) microscopy enables label free detection of nanoscale chromatin packing alterations that occur before visible cellular transformation. However, manual nuclear segmentation limits…

Image and Video Processing · Electrical Eng. & Systems 2025-10-28 Jahidul Arafat , Sanjaya Poudel

Scene labeling is a challenging classification problem where each input image requires a pixel-level prediction map. Recently, deep-learning-based methods have shown their effectiveness on solving this problem. However, we argue that the…

Computer Vision and Pattern Recognition · Computer Science 2017-06-12 Zhe Wang , Hongsheng Li , Wanli Ouyang , Xiaogang Wang

Reliable classification and detection of certain medical conditions, in images, with state-of-the-art semantic segmentation networks, require vast amounts of pixel-wise annotation. However, the public availability of such datasets is…

Computer Vision and Pattern Recognition · Computer Science 2023-03-17 Erik Ostrowski , Bharath Srinivas Prabakaran , Muhammad Shafique

Liquid chromatography with tandem mass spectrometry (LC-MS/MS) based proteomics is a well-established research field with major applications such as identification of disease biomarkers, drug discovery, drug design and development. In…

Quantitative Methods · Quantitative Biology 2018-01-08 Fatema Tuz Zohora , Ngoc Hieu Tran , Xianglilan Zhang , Lei Xin , Baozhen Shan , Ming Li

Image-based sequencing of mRNA makes it possible to see where in a tissue sample a given gene is active, and thus discern large numbers of different cell types in parallel. This is crucial for gaining a better understanding of tissue…

Quantitative Methods · Quantitative Biology 2018-02-27 Gabriele Partel , Giorgia Milli , Carolina Wählby

Convolutional neural networks (CNNs) have achieved remarkable performance in hyperspectral image (HSI) classification over the last few years. Despite the progress that has been made, rich and informative spectral information of HSI has…

Computer Vision and Pattern Recognition · Computer Science 2024-07-09 Huiling Wang

The study of structure-spectrum relationships is essential for spectral interpretation, impacting structural elucidation and material design. Predicting spectra from molecular structures is challenging due to their complex relationships.…

Computational Physics · Physics 2024-08-29 Fanjie Xu , Wentao Guo , Feng Wang , Lin Yao , Hongshuai Wang , Fujie Tang , Zhifeng Gao , Linfeng Zhang , Weinan E , Zhong-Qun Tian , Jun Cheng

Plants in their natural habitats endure an array of interacting stresses, both biotic and abiotic, that rarely occur in isolation. Nutrient stress-particularly nitrogen deficiency-becomes even more critical when compounded with drought and…

Computer Vision and Pattern Recognition · Computer Science 2025-09-16 Aswini Kumar Patra , Lingaraj Sahoo