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Kinetic models of biochemical systems used in the modern literature often contain hundreds or even thousands of variables. While these models are convenient for detailed simulations, their size is often an obstacle to deriving mechanistic…

Molecular Networks · Quantitative Biology 2021-06-29 Gleb Pogudin , Xingjian Zhang

The fixed-point logic LREC= was developed by Grohe et al. (CSL 2011) in the quest for a logic to capture all problems decidable in logarithmic space. It extends FO+C, first-order logic with counting, by an operator that formalises a limited…

Logic in Computer Science · Computer Science 2023-04-26 Steffen van Bergerem , Martin Grohe , Sandra Kiefer , Luca Oeljeklaus

So far, a very large amount of work in Natural Language Processing (NLP) rely on trees as the core mathematical structure to represent linguistic informations (e.g. in Chomsky's work). However, some linguistic phenomena do not cope properly…

Computation and Language · Computer Science 2013-02-27 Guillaume Bonfante , Bruno Guillaume

Many inference problems in structured prediction can be modeled as maximizing a score function on a space of labels, where graphs are a natural representation to decompose the total score into a sum of unary (nodes) and pairwise (edges)…

Machine Learning · Statistics 2021-02-19 Kevin Bello , Jean Honorio

We introduce the BIN_COUNTS constraint, which deals with the problem of counting the number of decision variables in a set which are assigned values that lie in given bins. We illustrate a decomposition and a filtering algorithm that…

Artificial Intelligence · Computer Science 2016-12-16 Roberto Rossi , Özgür Akgün , Steven Prestwich , Armagan Tarim

We prove that the existence of finite combinatorial objects such as affine planes, mutually orthogonal Latin squares, and resolvable balanced incomplete block designs can be reformulated as the existence of certain algorithmic reductions…

Combinatorics · Mathematics 2026-04-21 Damir D. Dzhafarov , Jun le Goh

The Weisfeiler-Leman dimension of a graph $G$ is the least number $k$ such that the $k$-dimensional Weisfeiler-Leman algorithm distinguishes $G$ from every other non-isomorphic graph. The dimension is a standard measure of the descriptive…

Computational Complexity · Computer Science 2024-11-18 Moritz Lichter , Simon Raßmann , Pascal Schweitzer

The cumulative pebbling complexity of a directed acyclic graph $G$ is defined as $\mathsf{cc}(G) = \min_P \sum_i |P_i|$, where the minimum is taken over all legal (parallel) black pebblings of $G$ and $|P_i|$ denotes the number of pebbles…

Computational Complexity · Computer Science 2019-11-19 Jeremiah Blocki , Seunghoon Lee , Samson Zhou

The graph reconstruction conjecture states that all graphs on at least three vertices are determined up to isomorphism by their deck. In this paper, a general framework for this problem is proposed to simply explain the reconstruction of…

Combinatorics · Mathematics 2018-10-26 Ameneh Farhadian

The study of Description Logics have been historically mostly focused on features that can be translated to decidable fragments of first-order logic. In this paper, we leave this restriction behind and look for useful and decidable…

Logic in Computer Science · Computer Science 2023-08-30 Joshua Hirschbrunn , Yevgeny Kazakov

We investigate the power of graph isomorphism algorithms based on algebraic reasoning techniques like Gr\"obner basis computation. The idea of these algorithms is to encode two graphs into a system of equations that are satisfiable if and…

Computational Complexity · Computer Science 2015-02-23 Christoph Berkholz , Martin Grohe

We develop a rewriting theory suitable for diagrammatic algebras and lay down the foundations of a systematic study of their higher structures. In this paper, we focus on the question of finding bases. As an application, we give the first…

Representation Theory · Mathematics 2025-02-06 Léo Schelstraete

The color refinement algorithm is mainly known as a heuristic method for graph isomorphism testing. It has surprising but natural characterizations in terms of, for example, homomorphism counts from trees and solutions to a system of linear…

Combinatorics · Mathematics 2023-12-20 Jan Böker

The probabilistic satisfiability of a logical expression is a fundamental concept known as the partition function in statistical physics and field theory, an evaluation of a related graph's Tutte polynomial in mathematics, and the…

Discrete Mathematics · Computer Science 2022-06-09 Stephen Eubank , Madhurima Nath , Yihui Ren , Abhijin Adiga

Multiway data analysis aims to uncover patterns in data structured as multi-indexed arrays, with multiway covariance playing a crucial role in many applications. However, the high dimensionality of multiway covariance presents significant…

Statistics Theory · Mathematics 2026-03-19 Dogyoon Song , Alfred O. Hero

Following a general program of studying limits of discrete structures, and motivated by the theory of limit objects of converge sequences of dense simple graphs, we study the limit of graph sequences such that every edge is labeled by an…

Combinatorics · Mathematics 2010-10-26 László Lovász , Balázs Szegedy

Testing algorithms across a wide range of problem instances is crucial to ensure the validity of any claim about one algorithm's superiority over another. However, when it comes to inference algorithms for probabilistic logic programs,…

Logic in Computer Science · Computer Science 2020-09-14 Paulius Dilkas , Vaishak Belle

We continue the study of statistical/computational tradeoffs in learning robust classifiers, following the recent work of Bubeck, Lee, Price and Razenshteyn who showed examples of classification tasks where (a) an efficient robust…

Machine Learning · Statistics 2019-06-06 Akshay Degwekar , Preetum Nakkiran , Vinod Vaikuntanathan

We define a metric on $\mathbb{F}_q^n$ using the linear complexity of finite sequences. We will then develop a coding theory for this metric. We will give a Singleton-like bound and we will give constructions of subspaces of…

Information Theory · Computer Science 2018-03-19 Tovohery Randrianarisoa

The notion of bounded expansion captures uniform sparsity of graph classes and renders various algorithmic problems that are hard in general tractable. In particular, the model-checking problem for first-order logic is fixed-parameter…

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