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Large Language Models (LLMs) offer a promising approach to enhancing Explainable AI (XAI) by transforming complex machine learning outputs into easy-to-understand narratives, making model predictions more accessible to users, and helping…

Artificial Intelligence · Computer Science 2025-04-02 Ahsan Bilal , David Ebert , Beiyu Lin

Although supervised machine learning is popular for information extraction from clinical notes, creating large annotated datasets requires extensive domain expertise and is time-consuming. Meanwhile, large language models (LLMs) have…

Computation and Language · Computer Science 2024-01-26 Madhumita Sushil , Travis Zack , Divneet Mandair , Zhiwei Zheng , Ahmed Wali , Yan-Ning Yu , Yuwei Quan , Atul J. Butte

Recently, large language models (LLMs) have emerged as a groundbreaking technology and their unparalleled text generation capabilities have sparked interest in their application to the fundamental sentence representation learning task.…

Computation and Language · Computer Science 2024-05-20 Huiming Wang , Zhaodonghui Li , Liying Cheng , Soh De Wen , Lidong Bing

This paper explores the integration of Large Language Models (LLMs) into Automatic Speech Recognition (ASR) systems to improve transcription accuracy. The increasing sophistication of LLMs, with their in-context learning capabilities and…

Computation and Language · Computer Science 2025-06-03 Zeping Min , Jinbo Wang

Considering the significance of proteins, computational protein science has always been a critical scientific field, dedicated to revealing knowledge and developing applications within the protein sequence-structure-function paradigm. In…

Computational Engineering, Finance, and Science · Computer Science 2025-01-28 Wenqi Fan , Yi Zhou , Shijie Wang , Yuyao Yan , Hui Liu , Qian Zhao , Le Song , Qing Li

The use of generative artificial intelligence (AI) models is becoming ubiquitous in many fields. Though progress continues to be made, general purpose large language AI models (LLM) show a tendency to deliver creative answers, often called…

Molecular Networks · Quantitative Biology 2025-07-08 Pranta Saha , Joyce Reimer , Brook Byrns , Connor Burbridge , Neeraj Dhar , Jeffrey Chen , Steven Rayan , Gordon Broderick

Pretrained language models like BERT and T5 serve as crucial backbone encoders for dense retrieval. However, these models often exhibit limited generalization capabilities and face challenges in improving in domain accuracy. Recent research…

Computation and Language · Computer Science 2024-08-26 Kun Luo , Minghao Qin , Zheng Liu , Shitao Xiao , Jun Zhao , Kang Liu

The prediction of amyloidogenicity in peptides and proteins remains a focal point of ongoing bioinformatics. The crucial step in this field is to apply advanced computational methodologies. Many recent approaches to predicting…

Machine Learning · Computer Science 2025-08-19 Zohra Yagoub , Hafida Bouziane

The emergence of Large Language Models (LLMs) has fundamentally transformed natural language processing, making them indispensable across domains ranging from conversational systems to scientific exploration. However, their pre-trained…

Large Language Models (LLMs) have demonstrated significant promise in automating software development tasks, yet their capabilities with respect to software design tasks remains largely unclear. This study investigates the capabilities of…

Software Engineering · Computer Science 2025-03-11 L. P. Franciscatto Guerra , N. Ernst

Recently, Large Language Models (LLMs) have showcased their potential in various natural language processing tasks, including code generation. However, while significant progress has been made in adapting LLMs to generate code for several…

Machine Learning · Computer Science 2024-07-29 Erica Coppolillo , Francesco Calimeri , Giuseppe Manco , Simona Perri , Francesco Ricca

Language models (LMs) pre-trained on massive amounts of text, in particular bidirectional encoder representations from Transformers (BERT), generative pre-training (GPT), and GPT-2, have become a key technology for many natural language…

Computation and Language · Computer Science 2021-10-04 Xianrui Zheng , Chao Zhang , Philip C. Woodland

The rapid advancement of Large Language Models (LLMs) has led to a multitude of application opportunities. One traditional task for Information Retrieval systems is the summarization and classification of texts, both of which are important…

Computation and Language · Computer Science 2025-02-25 Gautam Kishore Shahi , Oliver Hummel

Deciphering the function of unseen protein sequences is a fundamental challenge with broad scientific impact, yet most existing methods depend on task-specific adapters or large-scale supervised fine-tuning. We introduce the…

Machine Learning · Computer Science 2025-10-14 Xinhui Chen , Zuchao Li , Mengqi Gao , Yufeng Zhang , Chak Tou Leong , Haoyang Li , Jiaqi Chen

Large Language Models (LLMs), such as Generative Pre-trained Transformers (GPTs) are revolutionizing the generation of human-like text, producing contextually relevant and syntactically correct content. Despite challenges like biases and…

Computation and Language · Computer Science 2025-08-04 Alper Yaman , Jannik Schwab , Christof Nitsche , Abhirup Sinha , Marco Huber

Machine learning has revolutionized polymer science by enabling rapid property prediction and generative design. Large language models (LLMs) offer further opportunities in polymer informatics by simplifying workflows that traditionally…

Computational Engineering, Finance, and Science · Computer Science 2026-02-20 Sonakshi Gupta , Akhlak Mahmood , Shivank Shukla , Rampi Ramprasad

The applications of large language models (LLMs) are promising for biomedical and healthcare research. Despite the availability of open-source LLMs trained using a wide range of biomedical data, current research on the applications of LLMs…

Machine Learning · Computer Science 2024-09-25 Tianyu Liu , Yijia Xiao , Xiao Luo , Hua Xu , W. Jim Zheng , Hongyu Zhao

Large language models (LLMs) excel in many natural language tasks, yet they struggle with complex mathemat-ical problem-solving, particularly in symbolic reasoning and maintaining consistent output. This study evalu-ates 10 LLMs with 7 to 8…

Machine Learning · Computer Science 2025-01-29 Evgenii Evstafev

Large language models (LLMs) have recently emerged as a powerful tool for a wide range of language generation tasks. Nevertheless, this progress has been slower in Arabic. In this work, we focus on the task of generating stories from LLMs.…

Computation and Language · Computer Science 2024-07-11 Ahmed Oumar El-Shangiti , Fakhraddin Alwajih , Muhammad Abdul-Mageed

Large language models (LLMs) have shown remarkable performance on many tasks in different domains. However, their performance in closed-book biomedical machine reading comprehension (MRC) has not been evaluated in depth. In this work, we…

Computation and Language · Computer Science 2024-10-28 Shubham Vatsal , Ayush Singh