Related papers: Generating Cofaces in Vietoris--Rips Filtration Or…
We present an algorithm for the computation of Vietoris-Rips persistence barcodes and describe its implementation in the software Ripser. The method relies on implicit representations of the coboundary operator and the filtration order of…
The Vietoris-Rips filtration is a versatile tool in topological data analysis. It is a sequence of simplicial complexes built on a metric space to add topological structure to an otherwise disconnected set of points. It is widely used…
We introduce a new invariant defined on the vertices of a given filtered simplicial complex, called codensity, which controls the impact of removing vertices on persistent homology. We achieve this control through the use of an interleaving…
The computational cost of persistent homology is often dominated by the growth of the underlying simplicial filtrations. Many different filtrations exist, each with its own assumptions and trade-offs, but all face some form of this growth…
A challenge in computational topology is to deal with large filtered geometric complexes built from point cloud data such as Vietoris-Rips filtrations. This has led to the development of schemes for parallel computation and compression…
Clearing is a simple but effective optimization for the standard algorithm of persistent homology (PH), which dramatically improves the speed and scalability of PH computations for Vietoris--Rips filtrations. Due to the quick growth of the…
We present an algorithm for computing the barcode of the image of a morphisms in persistent homology induced by an inclusion of filtered finite-dimensional chain complexes. These algorithms make use of the clearing optimization and can be…
In this paper we examine the descriptive potential of a combinatorial data structure known as "Generating Set" in constructing the boundary maps of a simplicial complex. By refining the approach of \cite{Dumas} in generating these maps, we…
The long computational time and large memory requirements for computing Vietoris Rips persistent homology from point clouds remains a significant deterrent to its application to big data. This paper aims to reduce the memory footprint of…
Suffix sort plays a critical role in various computational algorithms including genomics as well as in frequently used day to day software applications. The sorting algorithm becomes tricky when we have lot of repeated characters in the…
The persistent homology pipeline includes the reduction of a, so-called, boundary matrix. We extend the work of Bauer et al. (2014) and Chen et al. (2011) where they show how to use dependencies in the boundary matrix to adapt the reduction…
In this article we describe an algorithm that can be applied for the generation of various classes of maps on orientable surfaces. It uses existing generators for abstract graphs and combines them with an efficient embedding and isomorphism…
Matrix reduction is the standard procedure for computing the persistent homology of a filtered simplicial complex with $m$ simplices. Its output is a particular decomposition of the total boundary matrix, from which the persistence diagrams…
Standard sweep algorithms require an order of discrete points in Euclidean space, and rely on the property that, at a given point, all points in the halfspace below come earlier in this order. We are motivated by the problem of…
The Vietoris-Rips filtration for an $n$-point metric space is a sequence of large simplicial complexes adding a topological structure to the otherwise disconnected space. The persistent homology is a key tool in topological data analysis…
Computing Persistent Homology for large point clouds remains a bottleneck for the wider adoption of persistent homology by the scientific community. We present an algorithm which can compute the degree-1 Vietoris-Rips Persistent Homology of…
Previous work identifying depth-optimal $n$-channel sorting networks for $9\leq n \leq 16$ is based on exploiting symmetries of the first two layers. However, the naive generate-and-test approach typically applied does not scale. This paper…
Cographs have always been a research target in areas such as coloring, graph decomposition, and spectral theory. In this work, we present an algorithm to generate all unlabeled cographs with $n$ vertices, based on the generation of cotrees.…
We give an $O(n^2(k+\log n))$ algorithm for computing the $k$-dimensional persistent homology of a filtration of clique complexes of cyclic graphs on $n$ vertices. This is nearly quadratic in the number of vertices $n$, and therefore a…
An algorithm is developed for efficiently constructing the Lorentz covariant effective three-point vertices of the decay of a particle into two daughter particles in which all the masses and spins of the three particles can be arbitrary.…