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Biological systems transduce signals from their surroundings through a myriad of pathways. In this paper, we describe signal transduction as a communication system: the signal transduction receptor acts as the receiver in this system, and…

Information Theory · Computer Science 2019-01-25 Andrew W. Eckford , Peter J. Thomas

To understand sensory processing in neuronal populations, it is necessary to deliver stimuli to the sensory organs of animals and record evoked population activity downstream. However, the pathways from sensory input to synaptic currents in…

Neurons and Cognition · Quantitative Biology 2013-01-16 Tatjana Tchumatchenko , Jonathan P. Newman , Ming-fai Fong , Steve M. Potter

In this work, we propose a new communication system for illuminated areas, indoors and outdoors. Light sources in our environments -such as light bulbs or even the sun- are our signal emitters, but we do not modulate data at the light…

Networking and Internet Architecture · Computer Science 2017-01-09 Qing Wang , Marco Zuniga , Domenico Giustiniano

In this paper, we propose a bio-inspired receiver, which detects the electrons transmitted through a nanowire, then, it converts the detected information into a blue light using bioluminescence. Using light allows the designed receiver to…

Emerging Technologies · Computer Science 2020-09-25 Oussama Abderrahmane Dambri , Soumaya Cherkaoui

We report a theoretical/computational approach for modeling the current-voltage characteristics of sensing proteins. The modeling is applied to a couple of transmembrane proteins, bacteriorhodopsin and proteorhodopsin, sensitive to visible…

Biological Physics · Physics 2014-02-04 E Alfinito , J Pousset , L Reggiani

Information theory provides powerful tools for understanding communication systems. This analysis can be applied to intercellular signal transduction, which is a means of chemical communication among cells and microbes. We discuss how to…

Quantitative Methods · Quantitative Biology 2016-11-15 Andrew W. Eckford , Kenneth A. Loparo , Peter J. Thomas

Biomolecules exhibit a remarkable property of transforming signals from their environment. This paper presents a communication system design using a light-modulated protein channel: Synthetic Photoisomerizable Azobenzene-regulated K+…

Biomolecules · Quantitative Biology 2025-10-13 Taha Sajjad , Andrew W. Eckford

Statistical properties of environments experienced by biological signaling systems in the real world change, which necessitate adaptive responses to achieve high fidelity information transmission. One form of such adaptive response is gain…

Molecular Networks · Quantitative Biology 2012-05-01 Ilya Nemenman

Although many exciting applications of molecular communication (MC) systems are envisioned to be at microscale, the available MC testbeds reported in the literature so far are mostly at macroscale. This may partially be due to the fact that…

A diffusion-based molecular communication system has two major components: the diffusion in the medium, and the ligand-reception. Information bits, encoded in the time variations of the concentration of molecules, are conveyed to the…

Information Theory · Computer Science 2012-05-23 Arash Einolghozati , Mohsen Sardari , Faramarz Fekri

Resonant beam communications (RBCom), which adopt oscillating photons between two separate retroreflectors for information transmission, exhibit potential advantages over other types of wireless optical communications (WOC). However, echo…

Information Theory · Computer Science 2024-03-26 Yuanming Tian , Dongxu Li , Chuan Huang , Qingwen Liu , Shengli Zhou

Recently, a growing interest has been addressed to the electrical properties of bacteriorhodopsin (bR), a protein belonging to the transmembrane protein family. To take into account the structure-dependent nature of the current, in a…

Soft Condensed Matter · Physics 2015-03-06 E. Alfinito , L. Reggiani

This paper proposes an indoor visible light communication (VLC) system with multiple transmitters and receivers. Due to diffusivity of LED light beams, photodiode receive signals from many directions. We use one concave and one convex lens…

Signal Processing · Electrical Eng. & Systems 2021-01-12 Jiaqi Wei , Chen Gong , Nuo Huang , Zhengyuan Xu

Although many exciting applications of molecular communication (MC) systems are envisioned to be at microscale, the MC testbeds reported so far are mostly at macroscale. To link the macroworld to the microworld, we propose and demonstrate a…

The natural interactive materials under far-from-equilibrium conditions have significantly inspired advances in synthetic biomimetic materials. In artificial systems, gradient diffusion serves as the primary means of interaction between…

Optics · Physics 2025-03-11 Hongshuang Guo , Kai Li , Jianfeng Yang , Dengfeng Li , Fan Liu , Hao Zeng

Biochemical signal transduction, a form of molecular communication, can be modeled using graphical Markov channels with input-modulated transition rates. Such channel models are strongly non-Gaussian. In this paper we use a linear noise…

Quantitative Methods · Quantitative Biology 2019-08-30 Gregory R. Hessler , Andrew W. Eckford , Peter J. Thomas

Coherent control is extended to macroscopic processes under continuous pulsed laser irradiation. Here, this approach is used to analyze the experimentally measured two-photon phase control of currents emanating from a living brain cells…

Chemical Physics · Physics 2019-07-25 Cyrille Lavigne , Paul Brumer

The design of communication systems capable of processing and exchanging information through molecules and chemical processes is a rapidly growing interdisciplinary field, which holds the promise to revolutionize how we realize computing…

Emerging Technologies · Computer Science 2019-08-12 Dadi Bi , Yansha Deng , Massimiliano Pierobon , Arumugam Nallanathan

When moving from native to light activated bacteriorhodopsin, modification of charge transport consisting of an increase of conductance is correlated to the protein conformational change. A theoretical model based on a map of the protein…

Quantitative Methods · Quantitative Biology 2011-02-17 Eleonora Alfinito , Lino Reggiani

The design of biologically-inspired wireless communication systems using bacteria as the basic element of the system is initially motivated by a phenomenon called \emph{Quorum Sensing}. Due to high randomness in the individual behavior of a…

Information Theory · Computer Science 2016-11-17 Arash Einolghozati , Mohsen Sardari , Faramarz Fekri
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