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We propose and study a novel graph clustering method for data with an intrinsic network structure. Similar to spectral clustering, we exploit an intrinsic network structure of data to construct Euclidean feature vectors. These feature…

Machine Learning · Computer Science 2022-06-22 Y. SarcheshmehPour , Y. Tian , L. Zhang , A. Jung

Estimating the probabilities of linkages in a network has gained increasing interest in recent years. One popular model for network analysis is the exchangeable graph model (ExGM) characterized by a two-dimensional function known as a…

Methodology · Statistics 2018-09-05 Yi Su , Raymond K. W. Wong , Thomas C. M. Lee

Graph embeddings have become a key and widely used technique within the field of graph mining, proving to be successful across a broad range of domains including social, citation, transportation and biological. Graph embedding techniques…

Machine Learning · Computer Science 2018-06-21 Stephen Bonner , Ibad Kureshi , John Brennan , Georgios Theodoropoulos , Andrew Stephen McGough , Boguslaw Obara

In recent years, inductive graph embedding models, \emph{viz.}, graph neural networks (GNNs) have become increasingly accurate at link prediction (LP) in online social networks. The performance of such networks depends strongly on the input…

Machine Learning · Computer Science 2021-08-24 Chitrank Gupta , Yash Jain , Abir De , Soumen Chakrabarti

An emerging trend in deep learning research focuses on the applications of graph neural networks (GNNs) for mesh-based continuum mechanics simulations. Most of these learning frameworks operate on graphs wherein each edge connects two…

Fluid Dynamics · Physics 2024-10-08 Rui Gao , Indu Kant Deo , Rajeev K. Jaiman

Graphs are ubiquitous in social networks and biochemistry, where Graph Neural Networks (GNN) are the state-of-the-art models for prediction. Graphs can be evolving and it is vital to formally model and understand how a trained GNN responds…

Machine Learning · Computer Science 2024-03-12 Yazheng Liu , Xi Zhang , Sihong Xie

Recently there is a growing focus on graph data, and multi-view graph clustering has become a popular area of research interest. Most of the existing methods are only applicable to homophilous graphs, yet the extensive real-world graph data…

Machine Learning · Computer Science 2024-01-08 Zichen Wen , Yawen Ling , Yazhou Ren , Tianyi Wu , Jianpeng Chen , Xiaorong Pu , Zhifeng Hao , Lifang He

In graph representation learning, it is important that the complex geometric structure of the input graph, e.g. hidden relations among nodes, is well captured in embedding space. However, standard Euclidean embedding spaces have a limited…

Machine Learning · Computer Science 2023-07-11 Tuc Nguyen-Van , Dung D. Le , The-Anh Ta

Graph Neural Networks (GNNs) show strong expressive power on graph data mining, by aggregating information from neighbors and using the integrated representation in the downstream tasks. The same aggregation methods and parameters for each…

Machine Learning · Computer Science 2022-03-22 Xiaojun Ma , Qin Chen , Yuanyi Ren , Guojie Song , Liang Wang

Machine learning models that embed graphs in non-Euclidean spaces have shown substantial benefits in a variety of contexts, but their application has not been studied extensively in the biological domain, particularly with respect to…

Quantitative Methods · Quantitative Biology 2025-02-06 Daniel McNeela , Frederic Sala , Anthony Gitter

Many graph neural networks have been developed to learn graph representations in either Euclidean or hyperbolic space, with all nodes' representations embedded in a single space. However, a graph can have hyperbolic and Euclidean geometries…

Machine Learning · Computer Science 2023-03-06 See Hian Lee , Feng Ji , Wee Peng Tay

We consider a latent space model for random graphs where a node $i$ is associated to a random latent point $X_i$ on the Euclidean unit ball. The probability that an edge exists between two nodes is determined by a ``link'' function, which…

Machine Learning · Statistics 2020-10-27 Ernesto Araya Valdivia

Gaussian mixture block models are distributions over graphs that strive to model modern networks: to generate a graph from such a model, we associate each vertex $i$ with a latent feature vector $u_i \in \mathbb{R}^d$ sampled from a mixture…

Machine Learning · Statistics 2024-04-12 Shuangping Li , Tselil Schramm

Network Embeddings (NEs) map the nodes of a given network into $d$-dimensional Euclidean space $\mathbb{R}^d$. Ideally, this mapping is such that `similar' nodes are mapped onto nearby points, such that the NE can be used for purposes such…

Machine Learning · Statistics 2018-10-17 Bo Kang , Jefrey Lijffijt , Tijl De Bie

Recent advances in neural networks have solved common graph problems such as link prediction, node classification, node clustering, node recommendation by developing embeddings of entities and relations into vector spaces. Graph embeddings…

Social and Information Networks · Computer Science 2021-11-19 Archit Parnami , Mayuri Deshpande , Anant Kumar Mishra , Minwoo Lee

Graph Neural Networks (GNNs) have achieved a lot of success with graph-structured data. However, it is observed that the performance of GNNs does not improve (or even worsen) as the number of layers increases. This effect has known as…

Machine Learning · Computer Science 2023-01-10 Yeskendir Koishekenov

Recent years have seen tremendous growth of many online social networks such as Facebook, LinkedIn and MySpace. People connect to each other through these networks forming large social communities providing researchers rich datasets to…

Social and Information Networks · Computer Science 2013-11-15 Muhammad Qasim Pasta , Zohaib Jan , Faraz Zaidi , Celine Rozenblat

Graph Neural Network (GNN) is a powerful tool to perform standard machine learning on graphs. To have a Euclidean representation of every node in the Non-Euclidean graph-like data, GNN follows neighbourhood aggregation and combination of…

Machine Learning · Computer Science 2021-11-18 Sucheta Dawn , Sanghamitra Bandyopadhyay

We introduce a model for the formation of social networks, which takes into account the homophily or the tendency of individuals to associate and bond with similar others, and the mechanisms of global and local attachment as well as tie…

Physics and Society · Physics 2019-03-28 Yohsuke Murase , Hang-Hyun Jo , János Török , János Kertész , Kimmo Kaski

This paper addresses the challenging problem of retrieval and matching of graph structured objects, and makes two key contributions. First, we demonstrate how Graph Neural Networks (GNN), which have emerged as an effective model for various…

Machine Learning · Computer Science 2019-05-14 Yujia Li , Chenjie Gu , Thomas Dullien , Oriol Vinyals , Pushmeet Kohli