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Multiple sequence alignment (MSA) is a ubiquitous problem in computational biology. Although it is NP-hard to find an optimal solution for an arbitrary number of sequences, due to the importance of this problem researchers are trying to…

Artificial Intelligence · Computer Science 2011-09-29 S. Schroedl

We consider strongly-convex-strongly-concave saddle-point problems with general non-bilinear objective and different condition numbers with respect to the primal and the dual variables. First, we consider such problems with smooth composite…

Optimization and Control · Mathematics 2021-06-15 Vladislav Tominin , Yaroslav Tominin , Ekaterina Borodich , Dmitry Kovalev , Alexander Gasnikov , Pavel Dvurechensky

This study explores distributed optimization problems with clique-wise coupling via operator splitting and how we can utilize this framework for performance analysis and enhancement. This framework extends beyond conventional pairwise…

Optimization and Control · Mathematics 2025-06-24 Yuto Watanabe , Kazunori Sakurama

Stochastic Optimization is a cornerstone of operations research, providing a framework to solve optimization problems under uncertainty. Despite the development of numerous algorithms to tackle these problems, several persistent challenges…

Optimization and Control · Mathematics 2025-03-28 Di Zhang , Suvrajeet Sen

The performance of worst-case optimal join algorithms depends on the order in which the join attributes are processed. Selecting good orders before query execution is hard, due to the large space of possible orders and unreliable execution…

Databases · Computer Science 2023-08-01 Junxiong Wang , Immanuel Trummer , Ahmet Kara , Dan Olteanu

The quest for robust heuristics that are able to solve more than one problem is ongoing. In this paper, we present, discuss and analyse a technique called Evolutionary Squeaky Wheel Optimisation and apply it to two different personnel…

Artificial Intelligence · Computer Science 2016-11-17 Uwe Aickelin , Jingpeng Li , Edmund Burke

This paper presents the first implementation of a search tree data structure in an asynchronous shared-memory system that provides a wait-free algorithm for executing range queries on the tree, in addition to non-blocking algorithms for…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-05-15 Panagiota Fatourou , Eric Ruppert

Route recommendation systems commonly adopt a multi-stage pipeline involving fine-ranking and re-ranking to produce high-quality ordered recommendations. However, this paradigm faces three critical limitations. First, there is a…

Information Retrieval · Computer Science 2026-05-11 Chao Chen , Longfei Xu , Daohan Su , Tengfei Liu , Hanyu Guo , Yihai Duan , Kaikui Liu , Xiangxiang Chu

We present a novel approach to optimizing the reduction of Feynman integrals using integration-by-parts identities. By developing a priority function through the FunSearch algorithm, which combines large language models and genetic…

High Energy Physics - Phenomenology · Physics 2025-02-14 Zhuo-Yang Song , Tong-Zhi Yang , Qing-Hong Cao , Ming-xing Luo , Hua Xing Zhu

Stochastic convex optimization problems with nonlinear functional constraints are ubiquitous in signal processing applications including constrained least-squares, set-membership adaptive filtering, and trajectory optimization under…

Optimization and Control · Mathematics 2025-12-16 Panchajanya Sanyal , Srujan Teja Thomdapu , Ketan Rajawat

We address the computational efficiency in solving the A-optimal Bayesian design of experiments problems for which the observational map is based on partial differential equations and, consequently, is computationally expensive to evaluate.…

Numerical Analysis · Mathematics 2023-08-14 Vinh Hoang , Luis Espath , Sebastian Krumscheid , Raúl Tempone

Many tasks in machine learning and data mining, such as data diversification, non-parametric learning, kernel machines, clustering etc., require extracting a small but representative summary from a massive dataset. Often, such problems can…

Machine Learning · Computer Science 2018-09-17 Ashkan Norouzi-Fard , Jakub Tarnawski , Slobodan Mitrović , Amir Zandieh , Aida Mousavifar , Ola Svensson

Worst-case optimal join algorithms are the class of join algorithms whose runtime match the worst-case output size of a given join query. While the first provably worst-case optimal join algorithm was discovered relatively recently, the…

Databases · Computer Science 2018-06-27 Hung Q. Ngo

The spatial join is a popular operation in spatial database systems and its evaluation is a well-studied problem. As main memories become bigger and faster and commodity hardware supports parallel processing, there is a need to revamp…

Databases · Computer Science 2020-05-25 Dimitrios Tsitsigkos , Panagiotis Bouros , Nikos Mamoulis , Manolis Terrovitis

We study ranked enumeration of join-query results according to very general orders defined by selective dioids. Our main contribution is a framework for ranked enumeration over a class of dynamic programming problems that generalizes…

Databases · Computer Science 2020-09-15 Nikolaos Tziavelis , Deepak Ajwani , Wolfgang Gatterbauer , Mirek Riedewald , Xiaofeng Yang

Bit arrays, or bitmaps, are used to significantly speed up set operations in several areas, such as data warehousing, information retrieval, and data mining, to cite a few. However, bitmaps usually use a large storage space, thus requiring…

Data Structures and Algorithms · Computer Science 2015-03-14 Alessandro Colantonio , Roberto Di Pietro

State transition algorithm (STA) is a metaheuristic method for global optimization. Recently, a modified STA named parameter optimal state transition algorithm (POSTA) is proposed. In POSTA, the performance of expansion operator, rotation…

Optimization and Control · Mathematics 2024-05-02 Tianyu Liu

In first-principles design of solid solutions and disordered materials, exhaustive evaluation of all possible substitutional configurations is often impractical because the number of site occupations increases exponentially. Here, we…

Materials Science · Physics 2026-05-26 Tack Saquai , Kenta Hongo , Ryo Maezono , Tom Ichibha

Evolutionary Algorithms (EAs) have been shown to be powerful tools for complex optimization problems, which are ubiquitous in both communication and big data analytics. This paper presents a new EA, namely Negatively Correlated Search…

Neural and Evolutionary Computing · Computer Science 2016-03-09 Ke Tang , Peng Yang , Xin Yao

Simulated annealing (SA) is a stochastic global optimisation technique applicable to a wide range of discrete and continuous variable problems. Despite its simplicity, the development of an effective SA optimiser for a given problem hinges…

Machine Learning · Computer Science 2024-06-27 Alvaro H. C. Correia , Daniel E. Worrall , Roberto Bondesan