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Consider the following distance query for an $n$-node graph $G$ undergoing edge insertions and deletions: given two sets of nodes $I$ and $J$, return the distances between every pair of nodes in $I\times J$. This query is rather general and…
Given a directed acyclic graph with labeled vertices, we consider the problem of finding the most common label sequences ("traces") among all paths in the graph (of some maximum length m). Since the number of paths can be huge, we propose…
Maximal Common Subsequences (MCSs) between two strings X and Y are subsequences of both X and Y that are maximal under inclusion. MCSs relax and generalize the well known and widely used concept of Longest Common Subsequences (LCSs), which…
We study the decremental All-Pairs Shortest Paths (APSP) problem in undirected edge-weighted graphs. The input to the problem is an $n$-vertex $m$-edge graph $G$ with non-negative edge lengths, that undergoes a sequence of edge deletions.…
Let $G$ be an edge-weighted directed graph with $n$ vertices embedded on an orientable surface of genus $g$. We describe a simple deterministic lexicographic perturbation scheme that guarantees uniqueness of minimum-cost flows and shortest…
Advanced Persistent Threats (APTs) are a main impendence in cyber security of computer networks. In 2015, a successful breach remains undetected 146 days on average, reported by [Fi16].With our work we demonstrate a feasible and fast way to…
Rooted phylogenetic networks, or more generally, directed acyclic graphs (DAGs), are widely used to model species or gene relationships that traditional rooted trees cannot fully capture, especially in the presence of reticulate processes…
Scientific workflows are often represented as directed acyclic graphs (DAGs), where vertices correspond to tasks and edges represent the dependencies between them. Since these graphs are often large in both the number of tasks and their…
One of the most fundamental graph problems is finding a shortest path from a source to a target node. While in its basic forms the problem has been studied extensively and efficient algorithms are known, it becomes significantly harder as…
A minimum chain cover (MCC) of a $k$-width directed acyclic graph (DAG) $G = (V, E)$ is a set of $k$ chains (paths in the transitive closure) of $G$ such that every vertex appears in at least one chain in the cover. The state-of-the-art…
The \textsc{Co-Path/Cycle Packing} problem (resp. The \textsc{Co-Path Packing} problem) asks whether we can delete at most $k$ vertices from the input graph such that the remaining graph is a collection of induced paths and cycles (resp.…
Directed Acyclic Graph (DAG) is a popular approach to achieve scalability of blockchain networks. Due to its high efficiency in data communication and great scalability, DAG has been widely adopted in many applications such as Internet of…
This paper considers fully dynamic graph algorithms with both faster worst case update time and sublinear space. The fully dynamic graph connectivity problem is the following: given a graph on a fixed set of n nodes, process an online…
Bayesian network is a frequently-used method for fault detection and diagnosis in industrial processes. The basis of Bayesian network is structure learning which learns a directed acyclic graph (DAG) from data. However, the search space…
We study a large family of graph covering problems, whose definitions rely on distances, for graphs of bounded cyclomatic number (that is, the minimum number of edges that need to be removed from the graph to destroy all cycles). These…
Let $G=(V,E)$ be a finite undirected graph without loops and multiple edges. A subset $M \subseteq E$ of edges is a {\em dominating induced matching} ({\em d.i.m.}) in $G$ if every edge in $E$ is intersected by exactly one edge of $M$. In…
A Dynamic Graph Network is a graph in which each edge has an associated travel time and a capacity (width) that limits the number of items that can travel in parallel along that edge. Each vertex in this dynamic graph network begins with…
There is substantial literature dealing with fixed parameter algorithms for the dominating set problem on various families of graphs. In this paper, we give a $k^{O(dk)} n$ time algorithm for finding a dominating set of size at most $k$ in…
A Monge directed acyclic graph (DAG) $G$ on the nodes $1,2,\cdots,N$ has edges $\left( i,j\right) $ for $1\leq i<j\leq N$ carrying submodular edge-lengths. Finding a shortest $M$-link path from $1$ to $N$ in $G$ for any given $1<M<N-1$ has…
We study the fully dynamic All-Pairs Shortest Paths (APSP) problem in undirected edge-weighted graphs. Given an $n$-vertex graph $G$ with non-negative edge lengths, that undergoes an online sequence of edge insertions and deletions, the…