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Efficient ordinary differential equation solvers for chemical kinetics must take into account the available thread and instruction-level parallelism of the underlying hardware, especially on many-core coprocessors, as well as the numerical…

Computational Physics · Physics 2018-03-28 Christopher P. Stone , Andrew T. Alferman , Kyle E. Niemeyer

Distributed, large-scale quantum computing will need architectures that combine matter-based qubits with photonic links, but today's software stacks target either gate-based chips or linear-optical devices in isolation. We introduce Optyx,…

A one-step, a two-step, an abridged, a skeletal and four detailed kinetic schemes of hydrogen oxidation have been tested. A new skeletal kinetic scheme of hydrogen oxidation has been developed. The CFD calculations were carried out using…

Computational Engineering, Finance, and Science · Computer Science 2013-08-02 Victor P. Zhukov

Automated code generation can systematically exceed expert hand-optimization for recurrence relations-computational primitives ubiquitous in orthogonal polynomials, special functions, numerical integration, and molecular integral…

Programming Languages · Computer Science 2026-04-22 Rubén Darío Guerrero

High-performance GPU kernels are critical to modern machine learning systems, yet developing efficient implementations remains a challenging, expert-driven process due to the tight coupling between algorithmic structure, memory hierarchy…

Machine Learning · Computer Science 2026-04-03 Tara Saba , Anne Ouyang , Xujie Si , Fan Long

The cost of combustion simulations is often dominated by the evaluation of net production rates of chemical species and mixture thermodynamics (thermochemistry). Execution on computing accelerators (XPUs) like graphic processing units…

With the advent of high-performance computing techniques, the data for analysis has grown significantly. Here, graphic processing unit (GPU) based program kernels are discussed to exploit parallelism in the analysis codes specific to…

Computational Physics · Physics 2018-11-07 Gourav Shrivastav , Manish Agarwal

Automatic code generation is frequently used to create implementations of algorithms specifically tuned to particular hardware and application parameters. The code generation process involves the selection of adequate code transformations,…

Performance · Computer Science 2024-08-08 Dominik Ernst , Georg Hager , Markus Holzer , Matthias Knorr , Gerhard Wellein

The prediction of material properties through electronic-structure simulations based on density-functional theory has become routinely common, thanks, in part, to the steady increase in the number and robustness of available simulation…

The constrained nature of synthesizable chemical space poses a significant challenge for sampling molecules that are both synthetically accessible and possess desired properties. In this work, we present PrexSyn, an efficient and…

Machine Learning · Computer Science 2025-12-02 Shitong Luo , Connor W. Coley

This paper introduces a code generator designed for node-level optimized, extreme-scalable, matrix-free finite element operators on hybrid tetrahedral grids. It optimizes the local evaluation of bilinear forms through various techniques…

Computational Engineering, Finance, and Science · Computer Science 2024-04-15 Fabian Böhm , Daniel Bauer , Nils Kohl , Christie Alappat , Dominik Thönnes , Marcus Mohr , Harald Köstler , Ulrich Rüde

Combustion kinetic modeling is an integral part of combustion simulation, and extensive studies have been devoted to developing both high fidelity and computationally affordable models. Despite these efforts, modeling combustion kinetics is…

The prohibitive expense of automatic performance tuning at scale has largely limited the use of autotuning to libraries for shared-memory and GPU architectures. We introduce a framework for approximate autotuning that achieves a desired…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-03 Edward Hutter , Edgar Solomonik

Developing an efficient method to accelerate the speed of molecular dynamics is a central theme in the field of molecular simulation. One category among the methods are collective-variable-based methods, which rely on predefined collective…

Chemical Physics · Physics 2024-08-27 Jiahao Fan , Yanze Wang , Dongdong Wang , Linfeng Zhang

In recent years, the prospects of performing fundamental and applied studies at the next-generation high-intensity laser facilities have greatly stimulated the interest in performing large-scale simulations of laser interaction with matter…

Computational Physics · Physics 2020-10-19 V. Volokitin , S. Bastrakov , A. Bashinov , E. Efimenko , A. Muraviev , A. Gonoskov , I. Meyerov

Quantum computers can in principle simulate quantum physics exponentially faster than their classical counterparts, but some technical hurdles remain. Here we consider methods to make proposed chemical simulation algorithms computationally…

Our toolchain for accelerating application called Courier-FPGA, is designed for utilize the processing power of CPU-FPGA platforms for software programmers and non-expert users. It automatically gathers runtime information of library…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-08-22 Takaaki Miyajima , David Thomas , Hideharu Amano

We present an algorithmic method for the quantitative, performance-aware synthesis of concurrent programs. The input consists of a nondeterministic partial program and of a parametric performance model. The nondeterminism allows the…

Programming Languages · Computer Science 2015-03-19 Pavol Cerny , Krishnendu Chatterjee , Thomas Henzinger , Arjun Radhakrishna , Rohit Singh

With the emergence of new high-performance computing (HPC) accelerators, such as Nvidia and AMD GPUs, efficiently targeting diverse hardware architectures has become a major challenge for HPC application developers. The increasing hardware…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-27 Måns I. Andersson , Martin Karp , Niclas Jansson , Stefano Markidis

We have developed several autotuning benchmarks in CUDA that take into account performance-relevant source-code parameters and reach near peak-performance on various GPU architectures. We have used them during the development and evaluation…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-02-11 Jiří Filipovič , Jana Hozzová , Amin Nezarat , Jaroslav Oľha , Filip Petrovič