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Designing novel functional proteins crucially depends on accurately modeling their fitness landscape. Given the limited availability of functional annotations from wet-lab experiments, previous methods have primarily relied on…

Machine Learning · Computer Science 2024-12-03 Zuobai Zhang , Pascal Notin , Yining Huang , Aurélie Lozano , Vijil Chenthamarakshan , Debora Marks , Payel Das , Jian Tang

Landslides are a common natural disaster that can cause casualties, property safety threats and economic losses. Therefore, it is important to understand or predict the probability of landslide occurrence at potentially risky sites. A…

Machine Learning · Computer Science 2023-09-15 Cheng Chen , Lei Fan

Deep neural networks have shown remarkable performance when trained on independent and identically distributed data from a fixed set of classes. However, in real-world scenarios, it can be desirable to train models on a continuous stream of…

Machine Learning · Computer Science 2023-09-04 Nicolas Michel , Giovanni Chierchia , Romain Negrel , Jean-François Bercher , Toshihiko Yamasaki

The root-cause diagnostics of product quality defects in multistage manufacturing processes often requires a joint identification of crucial stages and process variables. To meet this requirement, this paper proposes a novel penalized…

Applications · Statistics 2020-06-11 Cheoljoon Jeong , Xiaolei Fang

In machine learning (ML) verification, the majority of procedures are non-quantitative and therefore cannot be used for verifying probabilistic models, or be applied in domains where hard guarantees are practically unachievable. The…

Artificial Intelligence · Computer Science 2024-10-24 Paolo Morettin , Andrea Passerini , Roberto Sebastiani

To enhance the accuracy of protein-protein interaction function prediction, a 2-order graphic neighbor information feature extraction method based on undirected simple graph is proposed in this paper, which extends the 1-order graphic…

Quantitative Methods · Quantitative Biology 2012-07-19 Jingwei Liu

We investigate the problem of statistical inference for logistic regression with high-dimensional covariates in settings where dependence among individuals is induced by an underlying Markov random field. Going beyond the pairwise…

Statistics Theory · Mathematics 2026-03-23 Josh Miles , Sohom Bhattacharya

Tennis is so popular that coaches and players are curious about factors other than skill, such as momentum. This article will try to define and quantify momentum, providing a basis for real-time analysis of tennis matches. Based on the…

Machine Learning · Computer Science 2026-03-25 Ruixin Peng , Ziqing Li

Many aspects of the study of protein folding and dynamics have been affected by the recent advances in machine learning. Methods for the prediction of protein structures from their sequences are now heavily based on machine learning tools.…

Biological Physics · Physics 2019-11-25 Frank Noé , Gianni De Fabritiis , Cecilia Clementi

Disease classification is a crucial element of biomedical research. Recent studies have demonstrated that machine learning techniques, such as Support Vector Machine (SVM) modeling, produce similar or improved predictive capabilities in…

Machine Learning · Statistics 2017-08-02 Jessica M. Rudd

Landscape-aware algorithm selection approaches have so far mostly been relying on landscape feature extraction as a preprocessing step, independent of the execution of optimization algorithms in the portfolio. This introduces a significant…

Neural and Evolutionary Computing · Computer Science 2022-06-08 Anja Jankovic , Diederick Vermetten , Ana Kostovska , Jacob de Nobel , Tome Eftimov , Carola Doerr

Polymer property performance prediction aims to forecast specific features or attributes of polymers, which has become an efficient approach to measuring their performance. However, existing machine learning models face challenges in…

Machine Learning · Computer Science 2024-09-25 Xuanming Hu , Dongjie Wang , Wangyang Ying , Yanjie Fu

Machine learning (ML) pipeline composition and optimisation have been studied to seek multi-stage ML models, i.e. preprocessor-inclusive, that are both valid and well-performing. These processes typically require the design and traversal of…

Machine Learning · Computer Science 2021-05-04 Tien-Dung Nguyen , David Jacob Kedziora , Katarzyna Musial , Bogdan Gabrys

The development of tabular foundation models (TFMs) has accelerated in recent years, showing strong potential to outperform traditional ML methods for structured data. A key finding is that TFMs can be pretrained entirely on synthetic…

Machine Learning · Computer Science 2025-12-04 Matthew Peroni , Franck Le , Vadim Sheinin

Recommendation systems have illustrated the significant progress made in characterizing users' preferences based on their past behaviors. Despite the effectiveness of recommending accurately, there exist several factors that are essential…

Information Retrieval · Computer Science 2022-11-01 Wei-Wei Du , Wei-Yao Wang , Wen-Chih Peng

Given a learning problem with real-world tradeoffs, which cost function should the model be trained to optimize? This is the metric selection problem in machine learning. Despite its practical interest, there is limited formal guidance on…

Machine Learning · Statistics 2022-08-22 Gaurush Hiranandani

Automated algorithm selection for continuous black-box optimization depends on representing problem information under limited probing and selecting solvers under heavy-tailed performance distributions. This paper proposes a geometric…

Machine Learning · Computer Science 2026-05-22 Jiabao Brad Wang , Xiang Shi , Yiliang Yuan , Mustafa Misir

To enhance the reproducibility and reliability of deep learning models, we address a critical gap in current training methodologies: the lack of mechanisms that ensure consistent and robust performance across runs. Our empirical analysis…

Machine Learning · Computer Science 2026-01-05 Waqas Ahmed , Sheeba Samuel , Kevin Coakley , Birgitta Koenig-Ries , Odd Erik Gundersen

In this paper we tackle the problem of point and probabilistic forecasting by describing a blending methodology of machine learning models that belong to gradient boosted trees and neural networks families. These principles were…

Machine Learning · Computer Science 2023-10-23 Ioannis Nasios , Konstantinos Vogklis

Support vector machines (SVMs) rely on the inherent geometry of a data set to classify training data. Because of this, we believe SVMs are an excellent candidate to guide the development of an analytic feature selection algorithm, as…

Machine Learning · Computer Science 2013-04-23 Carly Stambaugh , Hui Yang , Felix Breuer