English
Related papers

Related papers: A Regressor-Guided Graph Diffusion Model for Predi…

200 papers

Diffusion models deliver high-fidelity synthesis but remain slow due to iterative sampling. We empirically observe there exists feature invariance in deterministic sampling, and present InvarDiff, a training-free acceleration method that…

Computer Vision and Pattern Recognition · Computer Science 2025-12-08 Zihao Wu

Retrosynthesis poses a key challenge in biopharmaceuticals, aiding chemists in finding appropriate reactant molecules for given product molecules. With reactants and products represented as 2D graphs, retrosynthesis constitutes a…

Machine Learning · Computer Science 2025-07-22 Yiming Wang , Yuxuan Song , Yiqun Wang , Minkai Xu , Rui Wang , Hao Zhou , Wei-Ying Ma

Diffusion Transformers (DiT) have demonstrated remarkable generative capabilities but remain highly computationally expensive. Previous acceleration methods, such as pruning and distillation, typically rely on a fixed computational…

Computer Vision and Pattern Recognition · Computer Science 2026-02-17 Jiangshan Wang , Zeqiang Lai , Jiarui Chen , Jiayi Guo , Hang Guo , Xiu Li , Xiangyu Yue , Chunchao Guo

Diffusion models have recently attained significant interest within the community owing to their strong performance as generative models. Furthermore, its application to inverse problems have demonstrated state-of-the-art performance.…

Image and Video Processing · Electrical Eng. & Systems 2022-03-22 Hyungjin Chung , Byeongsu Sim , Jong Chul Ye

Designing mechanical linkages to achieve target end-effector trajectories presents a fundamental challenge due to the intricate coupling between continuous node placements, discrete topological configurations, and nonlinear kinematic…

Machine Learning · Computer Science 2026-01-08 Yayati Jadhav , Amir Barati Farimani

The rare-event sampling problem has long been the central limiting factor in molecular dynamics (MD), especially in biomolecular simulation. Recently, diffusion models such as BioEmu have emerged as powerful equilibrium samplers that…

Several different enzymes display an apparent diffusion coefficient that increases with the concentration of their substrate. Moreover, their motion becomes directed in substrate gradients. Currently, there are several competing models for…

Biological Physics · Physics 2020-09-23 Giovanni Giunta , Hamid Seyed-Allaei , Ulrich Gerland

Diffusion models have demonstrated remarkable capabilities in image synthesis and related generative tasks. Nevertheless, their practicality for real-world applications is constrained by substantial computational costs and latency issues.…

Computer Vision and Pattern Recognition · Computer Science 2024-04-16 Yefei He , Jing Liu , Weijia Wu , Hong Zhou , Bohan Zhuang

Predicting molecular conformations from molecular graphs is a fundamental problem in cheminformatics and drug discovery. Recently, significant progress has been achieved with machine learning approaches, especially with deep generative…

Machine Learning · Computer Science 2022-03-16 Minkai Xu , Lantao Yu , Yang Song , Chence Shi , Stefano Ermon , Jian Tang

Enzyme design plays a crucial role in both industrial production and biology. However, this field faces challenges due to the lack of comprehensive benchmarks and the complexity of enzyme design tasks, leading to a dearth of systematic…

Biomolecules · Quantitative Biology 2024-08-21 Jiangbin Zheng , Han Zhang , Qianqing Xu , An-Ping Zeng , Stan Z. Li

Diffusion models represent the state-of-the-art for solving inverse problems such as image restoration tasks. Diffusion-based inverse solvers incorporate a likelihood term to guide prior sampling, generating data consistent with the…

Machine Learning · Computer Science 2026-03-03 Bahareh Tolooshams , Aditi Chandrashekar , Rayhan Zirvi , Abbas Mammadov , Jiachen Yao , Chuwei Wang , Anima Anandkumar

Diffusion models are a powerful generative framework, but come with expensive inference. Existing acceleration methods often compromise image quality or fail under complex conditioning when operating in an extremely low-step regime. In this…

Computer Vision and Pattern Recognition · Computer Science 2024-05-09 Jonas Kohler , Albert Pumarola , Edgar Schönfeld , Artsiom Sanakoyeu , Roshan Sumbaly , Peter Vajda , Ali Thabet

We introduce Efficient Motion Diffusion Model (EMDM) for fast and high-quality human motion generation. Current state-of-the-art generative diffusion models have produced impressive results but struggle to achieve fast generation without…

Computer Vision and Pattern Recognition · Computer Science 2024-11-26 Wenyang Zhou , Zhiyang Dou , Zeyu Cao , Zhouyingcheng Liao , Jingbo Wang , Wenjia Wang , Yuan Liu , Taku Komura , Wenping Wang , Lingjie Liu

Model quantization is a promising method for accelerating and compressing diffusion models. Nevertheless, since post-training quantization (PTQ) fails catastrophically at low-bit cases, quantization-aware training (QAT) is essential.…

Computer Vision and Pattern Recognition · Computer Science 2025-07-10 Xuewen Liu , Zhikai Li , Minhao Jiang , Mengjuan Chen , Jianquan Li , Qingyi Gu

Transformer-based diffusion models have achieved significant advancements across a variety of generative tasks. However, producing high-quality outputs typically necessitates large transformer models, which result in substantial training…

Computer Vision and Pattern Recognition · Computer Science 2024-12-10 Gongfan Fang , Xinyin Ma , Xinchao Wang

In this paper, we propose adding enzymes to the propagation environment of a diffusive molecular communication system as a strategy for mitigating intersymbol interference. The enzymes form reaction intermediates with information molecules…

Information Theory · Computer Science 2014-10-17 Adam Noel , Karen C. Cheung , Robert Schober

Detecting abrupt changes in real-time data streams from scientific simulations presents a challenging task, demanding the deployment of accurate and efficient algorithms. Identifying change points in live data stream involves continuous…

Recent advances in fast sampling methods for diffusion models have demonstrated significant potential to accelerate generation on image modalities. We apply these methods to 3-dimensional molecular conformations by building on the recently…

Quantitative Methods · Quantitative Biology 2024-04-23 Romain Lacombe , Neal Vaidya

Estimation of division and death rates of lymphocytes in different conditions is vital for quantitative understanding of the immune system. Deuterium, in the form of deuterated glucose or heavy water, can be used to measure rates of…

Populations and Evolution · Quantitative Biology 2015-05-13 Vitaly V. Ganusov , Jose Borghans , Rob De Boer

Adverse drug reaction (ADR) detection is an essential task in the medical field, as ADRs have a gravely detrimental impact on patients' health and the healthcare system. Due to a large number of people sharing information on social media…

Computation and Language · Computer Science 2023-08-21 Yunzhi Qiu , Xiaokun Zhang , Weiwei Wang , Tongxuan Zhang , Bo Xu , Hongfei Lin