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Lead optimization in drug discovery requires efficiently navigating vast chemical space through iterative cycles to enhance molecular properties while preserving structural similarity to the original lead compound. Despite recent advances,…

Machine Learning · Computer Science 2025-09-29 Ziqing Wang , Yibo Wen , William Pattie , Xiao Luo , Weimin Wu , Jerry Yao-Chieh Hu , Abhishek Pandey , Han Liu , Kaize Ding

Optimization problems often require domain-specific expertise to design problem-dependent methodologies. Recently, several approaches have gained attention by integrating large language models (LLMs) into genetic algorithms. Building on…

Neural and Evolutionary Computing · Computer Science 2025-04-15 Yamato Shinohara , Jinglue Xu , Tianshui Li , Hitoshi Iba

Realizing high-throughput aberration-corrected Scanning Transmission Electron Microscopy (STEM) exploration of atomic structures requires rapid tuning of multipole probe correctors while compensating for the inevitable drift of the optical…

Machine Learning · Computer Science 2026-01-28 Utkarsh Pratiush , Austin Houston , Richard Liu , Gerd Duscher , Sergei Kalinin

This paper deals with the identification of linear stochastic dynamical systems, where the unknowns include system coefficients and noise variances. Conventional approaches that rely on the maximum likelihood estimation (MLE) require…

Machine Learning · Statistics 2025-08-18 Jinwen Xu , Qin Lu , Yaakov Bar-Shalom

In this paper we enhance Generalized Self-Adapting Particle Swarm Optimization algorithm (GAPSO), initially introduced at the Parallel Problem Solving from Nature 2018 conference, and to investigate its properties. The research on GAPSO is…

Neural and Evolutionary Computing · Computer Science 2020-03-02 Michał Okulewicz , Mateusz Zaborski , Jacek Mańdziuk

In decision-making under uncertainty, Contextual Robust Optimization (CRO) provides reliability by minimizing the worst-case decision loss over a prediction set. While recent advances use conformal prediction to construct prediction sets…

Machine Learning · Statistics 2025-12-25 Yajie Bao , Yang Hu , Haojie Ren , Peng Zhao , Changliang Zou

The dynamic of real-world optimization problems raises new challenges to the traditional particle swarm optimization (PSO). Responding to these challenges, the dynamic optimization has received considerable attention over the past decade.…

Neural and Evolutionary Computing · Computer Science 2019-03-27 Ahlem Aboud , Raja Fdhila , Adel M. Alimi

Neural operators have emerged as powerful data-driven frameworks for solving Partial Differential Equations (PDEs), offering significant speedups over numerical methods. However, existing neural operators struggle with scalability in…

Machine Learning · Computer Science 2025-05-29 Karn Tiwari , Niladri Dutta , N M Anoop Krishnan , Prathosh A P

It has always been a big challenge to identify subtle changes in Electroencephalogram (EEG) signals. Minor differences often lead to vital decisions, for example, which grade a certain tumour belong to or whether a haemorrhage can result in…

Systems and Control · Electrical Eng. & Systems 2022-06-01 Debojyoti Seth

Learning to optimize (L2O) has recently emerged as a promising approach to solving optimization problems by exploiting the strong prediction power of neural networks and offering lower runtime complexity than conventional solvers. While L2O…

Machine Learning · Computer Science 2021-12-21 Zhihui Shao , Jianyi Yang , Cong Shen , Shaolei Ren

Choosing decision variables deterministically (deterministic decision-making) can be regarded as a particular case of choosing decision variables probabilistically (probabilistic decision-making). It is necessary to investigate whether…

Optimization and Control · Mathematics 2023-09-18 Xun Shen , Yuhu Wu , Satoshi Ito , Jun-ichi Imura

Contextual stochastic optimization is an advanced methodology to model uncertainty in the presence of contextual information during decision planning processes. Although classical methodologies focus on minimizing the expectation of a…

Optimization and Control · Mathematics 2025-11-24 Man Yiu Tsang , Tony Sit , Hoi Ying Wong

Accelerated discovery in materials science demands autonomous systems capable of dynamically formulating and solving design problems. In this work, we introduce a novel framework that leverages Bayesian optimization over a problem…

Systems and Control · Electrical Eng. & Systems 2025-02-11 Danial Khatamsaz , Joseph Wagner , Brent Vela , Raymundo Arroyave , Douglas L. Allaire

The concurrent optimization of topology and fibre orientation is a promising approach to pursue higher strength and lighter weight of variable-stiffness structure. This study proposes a novel discrete-continuous scheme for the concurrent…

Geometric Topology · Mathematics 2023-06-22 Yaya Zhanga , Hu Wang , Jichao Yin , Shuhao Li , Mengzhu Yang

The escalating demand for long-context applications has intensified the necessity of extending the LLM context windows. Despite recent fine-tuning approaches successfully expanding context lengths, their high memory footprints, especially…

Computation and Language · Computer Science 2025-01-20 Tuowei Wang , Xingyu Chen , Kun Li , Ting Cao , Ju Ren , Yaoxue Zhang

Vision-and-Language Navigation (VLN) tasks have gained prominence within artificial intelligence research due to their potential application in fields like home assistants. Many contemporary VLN approaches, while based on transformer…

Computer Vision and Pattern Recognition · Computer Science 2025-04-01 Siqi Zhang , Yanyuan Qiao , Qunbo Wang , Zike Yan , Qi Wu , Zhihua Wei , Jing Liu

Multiobjective simulation optimization (MOSO) problems are optimization problems with multiple conflicting objectives, where evaluation of at least one of the objectives depends on a black-box numerical code or real-world experiment, which…

Optimization and Control · Mathematics 2025-01-13 Tyler H. Chang , Stefan M. Wild

A consensus-based optimization (CBO) algorithm, which enables derivative and mesh-free optimization, is presented to localize a bioluminescent source. The light propagation is modeled by the radiative transfer equation approximated by…

Quantitative Methods · Quantitative Biology 2024-11-04 Jan Friedrich , Sarah Schraven , Fabian Kiessling , Michael Herty

Optimization models with decision variables in multiple time scales are widely used across various fields such as integrated planning and scheduling. To address scalability challenges in these models, we present the Parametric Autotuning…

Optimization and Control · Mathematics 2024-07-24 Asha Ramanujam , Can Li

Recent progress of deep generative models in the vision and language domain has stimulated significant interest in more structured data generation such as molecules. However, beyond generating new random molecules, efficient exploration and…

Machine Learning · Computer Science 2024-11-08 Guanghao Wei , Yining Huang , Chenru Duan , Yue Song , Yuanqi Du