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We introduce Bi-GNN for modeling biological link prediction tasks such as drug-drug interaction (DDI) and protein-protein interaction (PPI). Taking drug-drug interaction as an example, existing methods using machine learning either only…

Computational Engineering, Finance, and Science · Computer Science 2020-06-26 Yunsheng Bai , Ken Gu , Yizhou Sun , Wei Wang

Hypergraph structure learning, which aims to learn the hypergraph structures from the observed signals to capture the intrinsic high-order relationships among the entities, becomes crucial when a hypergraph topology is not readily available…

Machine Learning · Computer Science 2025-03-12 Bohan Tang , Siheng Chen , Xiaowen Dong

Bilevel optimization refers to scenarios whereby the optimal solution of a lower-level energy function serves as input features to an upper-level objective of interest. These optimal features typically depend on tunable parameters of the…

Machine Learning · Computer Science 2024-03-08 Amber Yijia Zheng , Tong He , Yixuan Qiu , Minjie Wang , David Wipf

Point-of-Interest (POI) recommendation plays a vital role in various location-aware services. It has been observed that POI recommendation is driven by both sequential and geographical influences. However, since there is no annotated label…

Information Retrieval · Computer Science 2023-09-15 Yifang Qin , Yifan Wang , Fang Sun , Wei Ju , Xuyang Hou , Zhe Wang , Jia Cheng , Jun Lei , Ming Zhang

Teaching Graph Neural Networks (GNNs) to accurately classify nodes under severely noisy labels is an important problem in real-world graph learning applications, but is currently underexplored. Although pairwise training methods have…

Machine Learning · Computer Science 2023-06-06 Xuefeng Du , Tian Bian , Yu Rong , Bo Han , Tongliang Liu , Tingyang Xu , Wenbing Huang , Yixuan Li , Junzhou Huang

Recently, graph neural networks (GNNs) have proved to be suitable in tasks on unstructured data. Particularly in tasks as community detection, node classification, and link prediction. However, most GNN models still operate with static…

Machine Learning · Computer Science 2019-06-07 Darwin Saire Pilco , Adín Ramírez Rivera

Various graph neural networks (GNNs) have been proposed to solve node classification tasks in machine learning for graph data. GNNs use the structural information of graph data by aggregating the features of neighboring nodes. However, they…

Machine Learning · Computer Science 2022-12-29 Yuga Oishi , Ken kaneiwa

Current study on next POI recommendation mainly explores user sequential transitions with the fine-grained individual-user POI check-in trajectories only, which suffers from the severe check-in data sparsity issue. In fact, coarse-grained…

Information Retrieval · Computer Science 2024-08-27 Zhu Sun , Yu Lei , Lu Zhang , Chen Li , Yew-Soon Ong , Jie Zhang

Graph Neural Networks (GNNs) have emerged as the de facto standard for representation learning on graphs, owing to their ability to effectively integrate graph topology and node attributes. However, the inherent suboptimal nature of node…

Machine Learning · Computer Science 2023-12-27 Zhiyao Zhou , Sheng Zhou , Bochao Mao , Xuanyi Zhou , Jiawei Chen , Qiaoyu Tan , Daochen Zha , Yan Feng , Chun Chen , Can Wang

Next Point-of-Interest (POI) recommendation plays a crucial role in urban mobility applications. Recently, POI recommendation models based on Graph Neural Networks (GNN) have been extensively studied and achieved, however, the effective…

Generative paradigm, especially powered by Large Language Models (LLMs), has emerged as a new solution to the next point-of-interest (POI) recommendation. Pioneering studies usually adopt a two-stage pipeline, starting with a tokenizer…

Information Retrieval · Computer Science 2025-09-17 Ke Sun , Mayi Xu

Given the convenience of collecting information through online services, recommender systems now consume large scale data and play a more important role in improving user experience. With the recent emergence of Graph Neural Networks…

Information Retrieval · Computer Science 2020-09-03 Yishi Xu , Yingxue Zhang , Wei Guo , Huifeng Guo , Ruiming Tang , Mark Coates

Text classification plays an important role in various downstream text-related tasks, such as sentiment analysis, fake news detection, and public opinion analysis. Recently, text classification based on Graph Neural Networks (GNNs) has made…

Computation and Language · Computer Science 2025-12-24 Zuo Wang , Ye Yuan

Recent graph neural networks (GNNs) with the attention mechanism have historically been limited to small-scale homogeneous graphs (HoGs). However, GNNs handling heterogeneous graphs (HeGs), which contain several entity and relation types,…

Machine Learning · Computer Science 2023-04-25 Roshni G. Iyer , Wei Wang , Yizhou Sun

Graph neural networks have achieved great success in learning node representations for graph tasks such as node classification and link prediction. Graph representation learning requires graph pooling to obtain graph representations from…

Machine Learning · Computer Science 2020-07-22 Zhengyang Wang , Shuiwang Ji

The next Point-of-Interest (POI) recommendation task aims to predict users' next destinations based on their historical movement data and plays a key role in location-based services and personalized applications. Accurate next POI…

Information Retrieval · Computer Science 2025-05-21 Zhao Liu , Wei Liu , Huajie Zhu , Jianxing Yu , Jian Yin , Wang-Chien Lee , Shun Wang

Graph-structured data consisting of objects (i.e., nodes) and relationships among objects (i.e., edges) are ubiquitous. Graph-level learning is a matter of studying a collection of graphs instead of a single graph. Traditional graph-level…

Machine Learning · Computer Science 2022-06-01 Ge Zhang , Jia Wu , Jian Yang , Shan Xue , Wenbin Hu , Chuan Zhou , Hao Peng , Quan Z. Sheng , Charu Aggarwal

In this paper, we propose an end-to-end graph learning framework, namely Iterative Deep Graph Learning (IDGL), for jointly and iteratively learning graph structure and graph embedding. The key rationale of IDGL is to learn a better graph…

Machine Learning · Computer Science 2020-10-26 Yu Chen , Lingfei Wu , Mohammed J. Zaki

Graph structure learning (GSL), which aims to learn the adjacency matrix for graph neural networks (GNNs), has shown great potential in boosting the performance of GNNs. Most existing GSL works apply a joint learning framework where the…

Machine Learning · Computer Science 2023-03-02 Jianan Zhao , Qianlong Wen , Mingxuan Ju , Chuxu Zhang , Yanfang Ye

Point-of-interest (POI) recommendation systems aim to predict the next destinations of user based on their preferences and historical check-ins. Existing generative POI recommendation methods usually employ random numeric IDs for POIs,…

Information Retrieval · Computer Science 2025-06-19 Dongsheng Wang , Yuxi Huang , Shen Gao , Yifan Wang , Chengrui Huang , Shuo Shang