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Graph neural networks (GNNs), as the de-facto model class for representation learning on graphs, are built upon the multi-layer perceptrons (MLP) architecture with additional message passing layers to allow features to flow across nodes.…

Machine Learning · Computer Science 2023-08-07 Chenxiao Yang , Qitian Wu , Jiahua Wang , Junchi Yan

We investigate the problem of multiplex graph embedding, that is, graphs in which nodes interact through multiple types of relations (dimensions). In recent years, several methods have been developed to address this problem. However, the…

Machine Learning · Computer Science 2023-12-29 Kamel Abdous , Nairouz Mrabah , Mohamed Bouguessa

Hypergraphs are a powerful abstraction for representing higher-order interactions between entities of interest. To exploit these relationships in making downstream predictions, a variety of hypergraph neural network architectures have…

Machine Learning · Computer Science 2023-06-21 Yuxin Wang , Quan Gan , Xipeng Qiu , Xuanjing Huang , David Wipf

GNNs are widely used to solve various tasks including node classification and link prediction. Most of the GNN architectures assume the initial embedding to be random or generated from popular distributions. These initial embeddings require…

Machine Learning · Computer Science 2024-01-31 Shraban Kumar Chatterjee , Suman Kundu

We investigate the explainability of graph neural networks (GNNs) as a step toward elucidating their working mechanisms. While most current methods focus on explaining graph nodes, edges, or features, we argue that, as the inherent…

Machine Learning · Computer Science 2024-01-02 Shurui Gui , Hao Yuan , Jie Wang , Qicheng Lao , Kang Li , Shuiwang Ji

Domain generalization on graphs aims to develop models with robust generalization capabilities, ensuring effective performance on the testing set despite disparities between testing and training distributions. However, existing methods…

Machine Learning · Computer Science 2024-11-21 Qin Tian , Chen Zhao , Minglai Shao , Wenjun Wang , Yujie Lin , Dong Li

Uncovering rationales behind predictions of graph neural networks (GNNs) has received increasing attention over recent years. Instance-level GNN explanation aims to discover critical input elements, like nodes or edges, that the target GNN…

Machine Learning · Computer Science 2023-09-06 Tianxiang Zhao , Dongsheng Luo , Xiang Zhang , Suhang Wang

Deep learning over relational databases is conventionally realized by translating data into graph representations and applying graph-based neural networks within external frameworks. This round-trip between the database and external machine…

Databases · Computer Science 2026-05-26 Yuval Lev Lubarsky , Dean Light , Boaz Berger , Shunit Agmon , Benny Kimelfeld

Graph neural networks (GNNs) are popular machine learning models for graphs with many applications across scientific domains. However, GNNs are considered black box models, and it is challenging to understand how the model makes…

Machine Learning · Computer Science 2025-01-20 Selahattin Akkas , Ariful Azad

Graph anomaly detection plays a vital role for identifying abnormal instances in complex networks. Despite advancements of methodology based on deep learning in recent years, existing benchmarking approaches exhibit limitations that hinder…

Machine Learning · Computer Science 2024-03-08 Jing Gu , Dongmian Zou

A large number of real-world networks include multiple types of nodes and edges. Graph Neural Network (GNN) emerged as a deep learning framework to generate node and graph embeddings for downstream machine learning tasks. However, popular…

Machine Learning · Computer Science 2024-11-26 Ziynet Nesibe Kesimoglu , Serdar Bozdag

Graph Neural Networks (GNNs) are powerful tools for learning from graph-structured data, but their application to large graphs is hindered by computational costs. The need to process every neighbor for each node creates memory and…

Machine Learning · Computer Science 2025-12-30 Omar Alsaqa , Linh Thi Hoang , Muhammed Fatih Balin

With the increasing use of graph-structured data, there is also increasing interest in investigating graph data dependencies and their applications, e.g., in graph data profiling. Graph Generating Dependencies (GGDs) are a class of…

Databases · Computer Science 2025-02-04 Larissa C. Shimomura , Nikolay Yakovets , George Fletcher

Graph-level clustering is a fundamental task of data mining, aiming at dividing unlabeled graphs into distinct groups. However, existing deep methods that are limited by pooling have difficulty extracting diverse and complex graph structure…

Machine Learning · Computer Science 2025-04-03 Renda Han , Guangzhen Yao , Wenxin Zhang , Yu Li , Wen Xin , Huajie Lei , Mengfei Li , Zeyu Zhang , Chengze Du , Yahe Tian

The combinatorial pure exploration of causal bandits is the following online learning task: given a causal graph with unknown causal inference distributions, in each round we choose a subset of variables to intervene or do no intervention,…

Machine Learning · Computer Science 2023-03-15 Nuoya Xiong , Wei Chen

High-dimensional multiplex graphs are characterized by their high number of complementary and divergent dimensions. The existence of multiple hierarchical latent relations between the graph dimensions poses significant challenges to…

Machine Learning · Computer Science 2025-01-30 Kamel Abdous , Nairouz Mrabah , Mohamed Bouguessa

This work presents a comprehensive evaluation of neural network graph compilers across heterogeneous hardware platforms, addressing the critical gap between theoretical optimization techniques and practical deployment scenarios. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-04-30 Alireza Furutanpey , Carmen Walser , Philipp Raith , Pantelis A. Frangoudis , Schahram Dustdar

This paper proposes a novel representation of decomposable graphs based on semi-latent tree-dependent bipartite graphs. The novel representation has two main benefits. First, it enables a form of sub-clustering within maximal cliques of the…

Methodology · Statistics 2017-12-05 Mohamad Elmasri

Graph representation learning models aim to represent the graph structure and its features into low-dimensional vectors in a latent space, which can benefit various downstream tasks, such as node classification and link prediction. Due to…

Machine Learning · Computer Science 2023-04-27 Thanh Sang Nguyen , Jooho Lee , Van Thuy Hoang , O-Joun Lee

Graph Neural Networks (GNNs) have shown remarkable effectiveness in capturing abundant information in graph-structured data. However, the black-box nature of GNNs hinders users from understanding and trusting the models, thus leading to…

Machine Learning · Computer Science 2022-07-25 Jiaxuan Xie , Yezi Liu , Yanning Shen
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