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Multiplexed imaging data are revolutionizing our understanding of the composition and organization of tissues and tumors. A critical aspect of such tissue profiling is quantifying the spatial relationship relationships among cells at…

Quantitative Methods · Quantitative Biology 2024-05-06 Ajit J. Nirmal , Peter K. Sorger

GENFIT is an experiment-independent track-fitting toolkit that combines fitting algorithms, track representations, and measurement geometries into a modular framework. We report on a significantly improved version of GENFIT, based on…

Instrumentation and Detectors · Physics 2016-10-11 Johannes Rauch , Tobias Schlüter

Accelerated destructive degradation tests (ADDT) are often used to collect necessary data for assessing the long-term properties of polymeric materials. Based on the data, a thermal index (TI) is estimated. The TI can be useful for material…

Computation · Statistics 2016-11-23 Zhongnan Jin , Yimeng Xie , Yili Hong , Jennifer H. Van Mullekom

The study of complex many-body systems via analysis of the trajectories of the units that dynamically move and interact within them is a non-trivial task. The workflow for extracting meaningful information from the raw trajectory data is…

Materials Science · Physics 2025-10-31 Simone Martino , Matteo Becchi , Andrew Tarzia , Daniele Rapetti , Giovanni M. Pavan

HyperNetX (HNX) is an open source Python library for the analysis and visualization of complex network data modeled as hypergraphs. Initially released in 2019, HNX facilitates exploratory data analysis of complex networks using algebraic…

Mathematical Software · Computer Science 2023-10-19 Brenda Praggastis , Sinan Aksoy , Dustin Arendt , Mark Bonicillo , Cliff Joslyn , Emilie Purvine , Madelyn Shapiro , Ji Young Yun

The xPDFsuite software program is described. It is for processing and analyzing atomic pair distribution functions (PDF) from X-ray powder diffraction data. It provides a convenient GUI for SrXplanr and PDFgetX3, allowing the users to…

Materials Science · Physics 2015-02-25 Xiaohao Yang , Pavol Juhas , Christopher L. Farrow , Simon J. L. Billinge

In the Jupyter ecosystem, data visualization is usually done with "widgets" created as notebook cell outputs. While this mechanism works well in some circumstances, it is not well-suited to presenting interfaces that are long-lived,…

Instrumentation and Methods for Astrophysics · Physics 2022-12-09 Peter K. G. Williams , Jonathan Carifio , Henrik Norman , A. David Weigel

We present Nematus, a toolkit for Neural Machine Translation. The toolkit prioritizes high translation accuracy, usability, and extensibility. Nematus has been used to build top-performing submissions to shared translation tasks at WMT and…

NUISANCE is an open source C++ framework which facilitates detailed studies of neutrino interaction cross-section models implemented in Monte Carlo neutrino event generators. It provides a host of automated methods to perform comparisons of…

High Energy Physics - Experiment · Physics 2018-06-12 P. Stowell , C. Wret , C. Wilkinson , L. Pickering , S. Cartwright , Y. Hayato , K. Mahn , K. S. McFarland , J. Sobczyk , R. Terri , L. Thompson , M. O. Wascko , Y. Uchida

We introduce RVSNUpy, a new Python package designed to measure spectroscopic redshifts. Based on inverse-variance weighted cross-correlation, RVSNUpy determines the redshifts by comparing observed spectra with various rest-frame template…

Cosmology and Nongalactic Astrophysics · Physics 2025-05-06 Taewan Kim , Jubee Sohn , Ho Seong Hwang

We present VIINTER, a method for view interpolation by interpolating the implicit neural representation (INR) of the captured images. We leverage the learned code vector associated with each image and interpolate between these codes to…

Computer Vision and Pattern Recognition · Computer Science 2022-11-03 Brandon Yushan Feng , Susmija Jabbireddy , Amitabh Varshney

Interactive notebooks are a precious tool for creating graphical user interfaces and teaching materials. Python and Jupyter are becoming increasingly popular in this context, with Jupyter widgets at the core of the interactive…

Physics Education · Physics 2024-09-02 Dou Du , Taylor J. Baird , Kristjan Eimre , Sara Bonella , Giovanni Pizzi

The current fleet of X-ray telescopes produces a wealth of multi-dimensional data, allowing us to study sources in time, photon energy and polarization. At the same time, it has become increasingly clear that progress in our physical…

High Energy Astrophysical Phenomena · Physics 2025-12-12 Matteo Lucchini , Benjamin Ricketts , Phil Uttley , Daniela Huppenkothen

The Wide-Field Imaging Interferometry Testbed (WIIT) will provide valuable information for the development of space-based interferometers. This laboratory instrument operates at optical wavelengths and provides the ability to test…

In the railway domain, an interlocking is a computerised system that controls the railway signalling objects in order to allow a safe operation of the train traffic. Each interlocking makes use of particular data, called application data,…

Software Engineering · Computer Science 2015-06-12 Simon Busard , Quentin Cappart , Christophe Limbrée , Charles Pecheur , Pierre Schaus

MEMS Inertial Measurement Units (IMUs) as ubiquitous proprioceptive motion measurement devices are available on various everyday gadgets and robotic platforms. Nevertheless, the direct inference of geometrical transformations or odometry…

Machine Learning · Computer Science 2022-03-22 R. Khorrambakht , H. Damirchi , H. D. Taghirad

Nested sampling is an increasingly popular technique for Bayesian computation, in particular for multimodal, degenerate problems of moderate to high dimensionality. Without appropriate settings, however, nested sampling software may fail to…

Computation · Statistics 2019-01-23 Edward Higson , Will Handley , Mike Hobson , Anthony Lasenby

In this paper, we present the FATS (Feature Analysis for Time Series) library. FATS is a Python library which facilitates and standardizes feature extraction for time series data. In particular, we focus on one application: feature…

Instrumentation and Methods for Astrophysics · Physics 2015-09-02 Isadora Nun , Pavlos Protopapas , Brandon Sim , Ming Zhu , Rahul Dave , Nicolas Castro , Karim Pichara

This informal technical report details the geometric illustration of decision boundaries for ReLU units in a three layer fully connected neural network. The network is designed and trained to predict pixel intensity from an (x, y) input…

Machine Learning · Computer Science 2018-10-05 Luke N. Darlow , Amos J. Storkey

Cryogenic solid state detectors are widely used in dark matter and neutrino experiments, and require a sensible raw data analysis. For this purpose, we present Cait, an open source Python package with all essential methods for the analysis…

Instrumentation and Detectors · Physics 2022-12-26 Felix Wagner , Daniel Bartolot , Damir Rizvanovic , Florian Reindl , Jochen Schieck , Wolfgang Waltenberger
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