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We describe computationally efficient methods for learning mixtures in which each component is a directed acyclic graphical model (mixtures of DAGs or MDAGs). We argue that simple search-and-score algorithms are infeasible for a variety of…

Machine Learning · Computer Science 2015-05-19 Bo Thiesson , Christopher Meek , David Maxwell Chickering , David Heckerman

Retrieval-Augmented Generation (RAG) mitigates hallucination in Large Language Models (LLMs) by incorporating external data, with Knowledge Graphs (KGs) offering crucial information for question answering. Traditional Knowledge Graph…

Computation and Language · Computer Science 2025-09-08 Yushi Sun , Kai Sun , Yifan Ethan Xu , Xiao Yang , Xin Luna Dong , Nan Tang , Lei Chen

Memory retrieval in agentic large language model (LLM) systems is often treated as a static lookup problem, relying on flat vector search or fixed binary relational graphs. However, fixed graph structures cannot capture the varying…

Artificial Intelligence · Computer Science 2026-05-12 Dongming Jiang , Yi Li , Guanpeng Li , Qiannan Li , Bingzhe Li

Complex query answering (CQA) is an essential task for multi-hop and logical reasoning on knowledge graphs (KGs). Currently, most approaches are limited to queries among binary relational facts and pay less attention to n-ary facts (n>=2)…

Artificial Intelligence · Computer Science 2023-10-17 Haoran Luo , Haihong E , Yuhao Yang , Gengxian Zhou , Yikai Guo , Tianyu Yao , Zichen Tang , Xueyuan Lin , Kaiyang Wan

Knowledge graphs (KGs) have been widely used for question answering (QA) applications, especially the entity based QA. However, searching an-swers from an entire large-scale knowledge graph is very time-consuming and it is hard to meet the…

Artificial Intelligence · Computer Science 2021-07-30 Shuangyong Song

Logical reasoning over incomplete knowledge graphs to answer complex logical queries is a challenging task. With the emergence of new entities and relations in constantly evolving KGs, inductive logical reasoning over KGs has become a…

Computation and Language · Computer Science 2023-05-24 Siyuan Wang , Zhongyu Wei , Meng Han , Zhihao Fan , Haijun Shan , Qi Zhang , Xuanjing Huang

Graph neural networks have been used for a variety of learning tasks, such as link prediction, node classification, and node clustering. Among them, link prediction is a relatively under-studied graph learning task, with current…

Machine Learning · Computer Science 2022-08-29 Xinxing Wu , Qiang Cheng

Accurate protein function prediction requires integrating heterogeneous intrinsic signals (e.g., sequence and structure) with noisy extrinsic contexts (e.g., protein-protein interactions and GO term annotations). However, two key challenges…

Machine Learning · Computer Science 2025-10-28 Runjie Zheng , Zhen Wang , Anjie Qiao , Jiancong Xie , Jiahua Rao , Yuedong Yang

Question Answering (QA) models over Knowledge Bases (KBs) are capable of providing more precise answers by utilizing relation information among entities. Although effective, most of these models solely rely on fixed relation representations…

Computation and Language · Computer Science 2021-04-02 Xu Wang , Shuai Zhao , Bo Cheng , Jiale Han , Yingting Li , Hao Yang , Ivan Sekulic , Guoshun Nan

Large Language Models (LLMs) and Knowledge Graphs (KGs) offer a promising approach to robust and explainable Question Answering (QA). While LLMs excel at natural language understanding, they suffer from knowledge gaps and hallucinations.…

Machine Learning · Computer Science 2025-04-15 Jasper Linders , Jakub M. Tomczak

Complex query answering (CQA) on knowledge graphs (KGs) is gaining momentum as a challenging reasoning task. In this paper, we show that the current benchmarks for CQA might not be as complex as we think, as the way they are built distorts…

Machine Learning · Computer Science 2025-07-04 Cosimo Gregucci , Bo Xiong , Daniel Hernandez , Lorenzo Loconte , Pasquale Minervini , Steffen Staab , Antonio Vergari

Retrieval-Augmented Generation (RAG) enhances the factual grounding of Large Language Models by conditioning their outputs on external documents. However, standard embedding-based retrievers treat naturally structured corpora, such as…

Information Retrieval · Computer Science 2026-05-11 Giorgia Bolognesi , Claudio Estatico , Ulderico Fugacci , Isabella Mastroianni , Claudio Muselli , Luca Oneto

Knowledge Graph Embedding (KGE) aims to represent entities and relations of knowledge graph in a low-dimensional continuous vector space. Recent works focus on incorporating structural knowledge with additional information, such as entity…

Computation and Language · Computer Science 2018-08-14 Kai Wang , Yu Liu , Xiujuan Xu , Dan Lin

Knowledge graph (KG) embedding aims at embedding entities and relations in a KG into a lowdimensional latent representation space. Existing KG embedding approaches model entities andrelations in a KG by utilizing real-valued ,…

Machine Learning · Computer Science 2021-03-24 Chengjin Xu , Mojtaba Nayyeri , Yung-Yu Chen , Jens Lehmann

Optimization of directed acyclic graph (DAG) structures has many applications, such as neural architecture search (NAS) and probabilistic graphical model learning. Encoding DAGs into real vectors is a dominant component in most…

Machine Learning · Computer Science 2022-12-14 Zehao Dong , Muhan Zhang , Fuhai Li , Yixin Chen

Mainly motivated by the problem of modelling directional dependence relationships for multivariate count data in high-dimensional settings, we present a new algorithm, called learnDAG, for learning the structure of directed acyclic graphs…

Methodology · Statistics 2024-06-10 Thi Kim Hue Nguyen , Monica Chiogna , Davide Risso

Retrieval-Augmented Generation (RAG) has emerged as a powerful technique for enhancing the quality of responses in Question-Answering (QA) tasks. However, existing approaches often struggle with retrieving contextually relevant information,…

Computation and Language · Computer Science 2026-01-27 Tianyi Yang , Nashrah Haque , Vaishnave Jonnalagadda , Yuya Jeremy Ong , Zhehui Chen , Yanzhao Wu , Lei Yu , Divyesh Jadav , Wenqi Wei

Retrieval-Augmented Generation (RAG) significantly improves the performance of Large Language Models (LLMs) on knowledge-intensive tasks. However, varying response quality across LLMs under RAG necessitates intelligent routing mechanisms,…

Computation and Language · Computer Science 2025-10-20 Jiarui Zhang , Xiangyu Liu , Yong Hu , Chaoyue Niu , Fan Wu , Guihai Chen

We present QuOTE (Question-Oriented Text Embeddings), a novel enhancement to retrieval-augmented generation (RAG) systems, aimed at improving document representation for accurate and nuanced retrieval. Unlike traditional RAG pipelines,…

Information Retrieval · Computer Science 2025-02-18 Andrew Neeser , Kaylen Latimer , Aadyant Khatri , Chris Latimer , Naren Ramakrishnan

A recent approach to building consensus protocols on top of Directed Acyclic Graphs (DAGs) shows much promise due to its simplicity and stable throughput. However, as each node in the DAG typically includes a linear number of references to…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-03 Michael Anoprenko , Andrei Tonkikh , Alexander Spiegelman , Petr Kuznetsov , Anatoliy Zinovyev , Konstantin Shprenger