Related papers: osl-ephys: A Python toolbox for the analysis of el…
An open-source library called EOF which provides efficient two-way coupling between the finite element multi-physics simulation software Elmer and computational fluid dynamics software OpenFOAM is presented. Library controls interpolation…
Tools like Prot\'eg\'e support the creation and edition of one or more ontologies in a single workspace. They nevertheless require a user to be familiar with this kind of abstractions and their supporting techniques such as a reasoner and…
Echosounders are high-frequency sonar systems used to sense fish and zooplankton underwater. Their deployment on a variety of ocean observing platforms is generating vast amounts of data at an unprecedented speed from the oceans. Efficient…
The increasing adoption of digital health technologies has amplified the need for robust, interoperable solutions to manage complex healthcare data. We present the Spezi Data Pipeline, an open-source Python toolkit designed to streamline…
The study of complex many-body systems via analysis of the trajectories of the units that dynamically move and interact within them is a non-trivial task. The workflow for extracting meaningful information from the raw trajectory data is…
We present a Python toolbox for holographic and tomographic X-ray imaging. It comprises a collection of phase retrieval algorithms for the deeply holographic and direct contrast imaging regimes, including non-linear approaches and extended…
Electroencephalography (EEG) plays a crucial role in brain-computer interfaces (BCIs) and neurological diagnostics, but its real-world deployment faces challenges due to noise artifacts, missing data, and high annotation costs. We introduce…
Deep understanding of electromagnetic signals is fundamental to dynamic spectrum management, intelligent transportation, autonomous driving and unmanned vehicle perception. The field faces challenges because electromagnetic signals differ…
The proliferation of physiological sensors opens new opportunities to explore interactions, conduct experiments and evaluate the user experience with continuous monitoring of bodily functions. Commercial devices, however, can be costly or…
Biometrics-related research has been accelerated significantly by deep learning technology. However, there are limited open-source resources to help researchers evaluate their deep learning-based biometrics algorithms efficiently,…
Electroencephalography (EEG) is a powerful non-invasive brain imaging technique with a high temporal resolution that has seen extensive use across multiple areas of cognitive science research. This thesis adapts representational similarity…
Integral field spectroscopy (IFS) provides spatially resolved spectra, enabling detailed studies that address the physical and kinematic properties of the interstellar medium. A critical step in analyzing IFS data is the decomposition of…
Electrodermal activity (EDA) is a widely used physiological signal for assessing sympathetic nervous activity, such as arousal, stress, and pain. However, reliable decomposition into tonic and phasic components remains challenging,…
We present Clinica (www.clinica.run), an open-source software platform designed to make clinical neuroscience studies easier and more reproducible. Clinica aims for researchers to i) spend less time on data management and processing, ii)…
Liquid Chromatography Mass Spectrometry (LC-MS) is an indispensable analytical technique in proteomics, metabolomics, and other life sciences. While OpenMS provides advanced open-source software for MS data analysis, its complexity can be…
Python has become a dominant programming language for emerging areas like Machine Learning (ML), Deep Learning (DL), and Data Science (DS). An attractive feature of Python is that it provides easy-to-use programming interface while allowing…
The Einstein On-Line Service (EOLS) is a simple menu-driven system which provides an intuitive method of querying over one hundred database catalogs. In addition, the EOLS contains over 30 CDROMs of images from the Einstein X-ray…
Current pain assessment within hospitals often relies on self-reporting or non-specific EKG vital signs. This system leaves critically ill, sedated, and cognitively impaired patients vulnerable to undertreated pain and opioid overuse.…
This PhD thesis introduces the concept of meta-electrodes coupled with laser optoporation for high quality intracellular signals from hiPSCs-CM. These signals can be recorded on high-density commercial CMOS-MEAs from 3Brain characterized by…
The coffea framework provides a new approach to High-Energy Physics analysis, via columnar operations, that improves time-to-insight, scalability, portability, and reproducibility of analysis. It is implemented with the Python programming…